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pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures

Journal of medicinal chemistry, 2015-05, Vol.58 (9), p.4066-4072

2015

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Understanding and predicting the functional consequences of missense mutations in BRCA1 and BRCA2

Scientific reports, 2022-06, Vol.12 (1), p.10458-10458, Article 10458

2022

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Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

BMC bioinformatics, 2022-01, Vol.23 (1), p.4-4, Article 4

2022

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mCSM: predicting the effects of mutations in proteins using graph-based signatures

Bioinformatics, 2014-02, Vol.30 (3), p.335-342

2014

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DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations

Protein science, 2021-01, Vol.30 (1), p.60-69

2021

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mycoCSM: Using Graph-Based Signatures to Identify Safe Potent Hits against Mycobacteria

Journal of chemical information and modeling, 2020-07, Vol.60 (7), p.3450-3456

2020

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DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W314

2014

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Preventing Digital Overdiagnosis

JAMA : the journal of the American Medical Association, 2022-02, Vol.327 (6), p.525

2022

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piscesCSM: prediction of anticancer synergistic drug combinations

Journal of cheminformatics, 2024-07, Vol.16 (1), p.81-13, Article 81

2024

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mCSM-AB: a web server for predicting antibody-antigen affinity changes upon mutation with graph-based signatures

Nucleic acids research, 2016-07, Vol.44 (W1), p.W469

2016

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mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance

Scientific reports, 2016-07, Vol.6 (1), p.29575-29575, Article 29575

2016

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CSM-lig: a web server for assessing and comparing protein-small molecule affinities

Nucleic acids research, 2016-07, Vol.44 (W1), p.W557

2016

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mCSM-AB2: guiding rational antibody design using graph-based signatures

Bioinformatics, 2020-03, Vol.36 (5), p.1453-1459

2020

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pdCSM-cancer: Using Graph-Based Signatures to Identify Small Molecules with Anticancer Properties

Journal of chemical information and modeling, 2021-07, Vol.61 (7), p.3314-3322

2021

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Widespread remodeling of proteome solubility in response to different protein homeostasis stresses

Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (5), p.2422-2431

2020

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pdCSM-PPI: Using Graph-Based Signatures to Identify Protein–Protein Interaction Inhibitors

Journal of chemical information and modeling, 2021-11, Vol.61 (11), p.5438-5445

2021

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The Presence, Persistence and Functional Properties of Plasmodium vivax Duffy Binding Protein II Antibodies Are Influenced by HLA Class II Allelic Variants

PLoS neglected tropical diseases, 2016-12, Vol.10 (12), p.e0005177-e0005177

2016

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A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

Investigative ophthalmology & visual science, 2017-10, Vol.58 (12), p.5320-5328

2017

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mCSM-PPI2: predicting the effects of mutations on protein-protein interactions

Nucleic acids research, 2019-07, Vol.47 (W1), p.W338

2019

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A structural biology community assessment of AlphaFold2 applications

Nature structural & molecular biology, 2022-11, Vol.29 (11), p.1056

2022

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mCSM-NA: predicting the effects of mutations on protein-nucleic acids interactions

Nucleic acids research, 2017-07, Vol.45 (W1), p.W241

2017

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SARS-CoV-2 Africa dashboard for real-time COVID-19 information

Nature microbiology, 2023-01, Vol.8 (1), p.1

2023

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mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions

Nucleic acids research, 2021-07, Vol.49 (W1), p.W417

2021

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Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

BMC genomics, 2011-12, Vol.12 Suppl 4 (Suppl 4), p.S12-S12, Article S12

2011

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Prediction and Optimization of Pharmacokinetic and Toxicity Properties of the Ligand

Methods in molecular biology (Clifton, N.J.), 2018-01, Vol.1762, p.271

2018

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pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures

Understanding and predicting the functional consequences of missense mutations in BRCA1 and BRCA2

Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT

mCSM: predicting the effects of mutations in proteins using graph-based signatures

DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations

mycoCSM: Using Graph-Based Signatures to Identify Safe Potent Hits against Mycobacteria

DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach

Preventing Digital Overdiagnosis

piscesCSM: prediction of anticancer synergistic drug combinations

mCSM-AB: a web server for predicting antibody-antigen affinity changes upon mutation with graph-based signatures

mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance

CSM-lig: a web server for assessing and comparing protein-small molecule affinities

mCSM-AB2: guiding rational antibody design using graph-based signatures

pdCSM-cancer: Using Graph-Based Signatures to Identify Small Molecules with Anticancer Properties

Widespread remodeling of proteome solubility in response to different protein homeostasis stresses

pdCSM-PPI: Using Graph-Based Signatures to Identify Protein–Protein Interaction Inhibitors

The Presence, Persistence and Functional Properties of Plasmodium vivax Duffy Binding Protein II Antibodies Are Influenced by HLA Class II Allelic Variants

A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

mCSM-PPI2: predicting the effects of mutations on protein-protein interactions

A structural biology community assessment of AlphaFold2 applications

mCSM-NA: predicting the effects of mutations on protein-nucleic acids interactions

SARS-CoV-2 Africa dashboard for real-time COVID-19 information

mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

Prediction and Optimization of Pharmacokinetic and Toxicity Properties of the Ligand

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