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Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations

Nature communications, 2017-07, Vol.8 (1), p.15959-15959, Article 15959

2017

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Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

Nature (London), 2013-05, Vol.497 (7451), p.643-646

2013

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Full scale structural, mechanical and dynamical properties of HIV-1 liposomes

PLoS computational biology, 2022-01, Vol.18 (1), p.e1009781-e1009781

2022

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Inositol phosphates are assembly co-factors for HIV-1

Nature (London), 2018-08, Vol.560 (7719), p.509-512

2018

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Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis

PLoS biology, 2020-12, Vol.18 (12), p.e3001015-e3001015

2020

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Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining

Nature communications, 2023-04, Vol.14 (1), p.2014-2014, Article 2014

2023

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All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits

eLife, 2018-04, Vol.7

2018

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MxB Restricts HIV-1 by Targeting the Tri-hexamer Interface of the Viral Capsid

Structure (London), 2019-08, Vol.27 (8), p.1234-1245.e5

2019

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Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR

Nature structural & molecular biology, 2020-09, Vol.27 (9), p.863-869

2020

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All-Atom Molecular Dynamics of Virus Capsids as Drug Targets

The journal of physical chemistry letters, 2016-05, Vol.7 (10), p.1836-1844

2016

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Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site

Nature communications, 2016-03, Vol.7 (1), p.10714-10714, Article 10714

2016

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Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly

PLoS pathogens, 2020-01, Vol.16 (1), p.e1008277-e1008277

2020

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FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking

Cell reports (Cambridge), 2019-08, Vol.28 (9), p.2373-2385.e7

2019

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Molecular architecture and conservation of an immature human endogenous retrovirus

Nature communications, 2023-08, Vol.14 (1), p.5149-11, Article 5149

2023

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Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode

Nature communications, 2022-04, Vol.13 (1), p.2114-12, Article 2114

2022

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Structural basis of HIV-1 maturation inhibitor binding and activity

Nature communications, 2023-03, Vol.14 (1), p.1237-1237, Article 1237

2023

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Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization

Nature communications, 2023-09, Vol.14 (1), p.5614-12, Article 5614

2023

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Dynamic allostery governs cyclophilin A–HIV capsid interplay

Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (47), p.14617-14622

2015

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Quenching protein dynamics interferes with HIV capsid maturation

Nature communications, 2017-11, Vol.8 (1), p.1779-12, Article 1779

2017

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CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

eLife, 2015-11, Vol.4

2015

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Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA

Nature communications, 2019-06, Vol.10 (1), p.2747-12, Article 2747

2019

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HIV‑1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD

Journal of the American Chemical Society, 2016-10, Vol.138 (42), p.14066-14075

2016

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Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007877-e1007877

2020

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Computational structural biology: Evolution of the field

Journal of structural biology, 2024-09, Vol.216 (3), p.108055, Article 108055

2024

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Atomic Modeling of an Immature Retroviral Lattice Using Molecular Dynamics and Mutagenesis

Structure (London), 2015-08, Vol.23 (8), p.1414-1425

2015

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Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

Full scale structural, mechanical and dynamical properties of HIV-1 liposomes

Inositol phosphates are assembly co-factors for HIV-1

Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis

Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining

All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits

MxB Restricts HIV-1 by Targeting the Tri-hexamer Interface of the Viral Capsid

Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR

All-Atom Molecular Dynamics of Virus Capsids as Drug Targets

Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly

FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking

Molecular architecture and conservation of an immature human endogenous retrovirus

Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode

Structural basis of HIV-1 maturation inhibitor binding and activity

Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization

Dynamic allostery governs cyclophilin A–HIV capsid interplay

Quenching protein dynamics interferes with HIV capsid maturation

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA

HIV‑1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD

Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC

Computational structural biology: Evolution of the field

Atomic Modeling of an Immature Retroviral Lattice Using Molecular Dynamics and Mutagenesis

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