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RNA-seq: impact of RNA degradation on transcript quantification

BMC biology, 2014-05, Vol.12 (1), p.42-42, Article 42

2014

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The genetic and mechanistic basis for variation in gene regulation

PLoS genetics, 2015-01, Vol.11 (1), p.e1004857-e1004857

2015

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Controls of nucleosome positioning in the human genome

PLoS genetics, 2012-11, Vol.8 (11), p.e1003036-e1003036

2012

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Noisy splicing drives mRNA isoform diversity in human cells

PLoS genetics, 2010-12, Vol.6 (12), p.e1001236-e1001236

2010

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A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues

PLoS genetics, 2011-02, Vol.7 (2), p.e1001316-e1001316

2011

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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

Proceedings of the National Academy of Sciences - PNAS, 2012-01, Vol.109 (4), p.1204-1209

2012

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Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection

PLoS genetics, 2016-09, Vol.12 (9), p.e1006338-e1006338

2016

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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome research, 2011-03, Vol.21 (3), p.447

2011

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Genome-wide kinetic profiling of pre-mRNA 3' end cleavage

RNA (Cambridge), 2024-03, Vol.30 (3), p.256

2024

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A cohesin traffic pattern genetically linked to gene regulation

Nature structural & molecular biology, 2022-12, Vol.29 (12), p.1239

2022

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DNase I sensitivity QTLs are a major determinant of human expression variation

Nature (London), 2012-02, Vol.482 (7385), p.390-394

2012

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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Genome biology, 2011-01, Vol.12 (1), p.R10-R10, Article R10

2011

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Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

Bioinformatics, 2009-12, Vol.25 (24), p.3207-3212

2009

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Numerous recursive sites contribute to accuracy of splicing in long introns in flies

PLoS genetics, 2018-08, Vol.14 (8), p.e1007588-e1007588

2018

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Environmental influences on RNA processing: Biochemical, molecular and genetic regulators of cellular response

Wiley interdisciplinary reviews. RNA, 2019-01, Vol.10 (1), p.e1503-n/a

2019

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Self-inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo

Nature communications, 2021-11, Vol.12 (1), p.6267-6267, Article 6267

2021

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The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels

PLoS genetics, 2012-10, Vol.8 (10), p.e1003000-e1003000

2012

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Dissecting the regulatory architecture of gene expression QTLs

Genome biology, 2012-01, Vol.13 (1), p.R7-R7

2012

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Environmental perturbations lead to extensive directional shifts in RNA processing

PLoS genetics, 2017-10, Vol.13 (10), p.e1006995-e1006995

2017

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DNase I sensitivity QTLs are a major determinant of human expression variation

Nature (London), 2012-02, Vol.482 (7385), p.390

2012

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

Nature (London), 2010-04, Vol.464 (7289), p.768-772

2010

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G-rich motifs within phosphorothioate-based antisense oligonucleotides (ASOs) drive activation of FXN expression through indirect effects

Nucleic acids research, 2022-12, Vol.50 (22), p.12657

2022

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Correction: DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

GenomeBiology.com, 2011-07, Vol.12 (6), p.405-405

2011

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The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture

eLife, 2017-12, Vol.6

2017

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RNA-seq: impact of RNA degradation on transcript quantification

The genetic and mechanistic basis for variation in gene regulation

Controls of nucleosome positioning in the human genome

Noisy splicing drives mRNA isoform diversity in human cells

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome-wide kinetic profiling of pre-mRNA 3' end cleavage

A cohesin traffic pattern genetically linked to gene regulation

DNase I sensitivity QTLs are a major determinant of human expression variation

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

Numerous recursive sites contribute to accuracy of splicing in long introns in flies

A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system

Environmental influences on RNA processing: Biochemical, molecular and genetic regulators of cellular response

Self-inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels

Dissecting the regulatory architecture of gene expression QTLs

Environmental perturbations lead to extensive directional shifts in RNA processing

DNase I sensitivity QTLs are a major determinant of human expression variation

Understanding mechanisms underlying human gene expression variation with RNA sequencing

G-rich motifs within phosphorothioate-based antisense oligonucleotides (ASOs) drive activation of FXN expression through indirect effects

Correction: DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture

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