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Methods for mapping 3D chromosome architecture

Nature reviews. Genetics, 2020-04, Vol.21 (4), p.207-226

2020

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A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment

Nature neuroscience, 2019-06, Vol.22 (6), p.1021-1035

2019

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Understanding the glioblastoma immune microenvironment as basis for the development of new immunotherapeutic strategies

eLife, 2020-02, Vol.9

2020

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Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

PLoS biology, 2006-05, Vol.4 (5), p.e138

2006

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Polymer physics predicts the effects of structural variants on chromatin architecture

Nature genetics, 2018-05, Vol.50 (5), p.662-667

2018

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Complexity of chromatin folding is captured by the strings and binders switch model

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (40), p.16173-16178

2012

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Modifications of RNA polymerase II are pivotal in regulating gene expression states

EMBO reports, 2009-11, Vol.10 (11), p.1213-1219

2009

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Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

Nature methods, 2021-05, Vol.18 (5), p.482-490

2021

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Differential plasticity and fate of brain-resident and recruited macrophages during the onset and resolution of neuroinflammation

Immunity (Cambridge, Mass.), 2022-11, Vol.55 (11), p.2085-2102.e9

2022

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Formation of new chromatin domains determines pathogenicity of genomic duplications

Nature (London), 2016-10, Vol.538 (7624), p.265-269

2016

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Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment

Nature cell biology, 2016-08, Vol.18 (8), p.864-875

2016

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Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription

BioEssays, 2016-09, Vol.38 (9), p.881-893

2016

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Three-dimensional genome architecture: players and mechanisms

Nature reviews. Molecular cell biology, 2015-04, Vol.16 (4), p.245-257

2015

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Specialization of 3D genome structure in different cell types and states

Biophysical journal, 2024-02, Vol.123 (3), p.441a-441a

Pombo, Ana

2024

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Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Molecular systems biology, 2015-12, Vol.11 (12), p.852-n/a

2015

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Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

Nature cell biology, 2007-12, Vol.9 (12), p.1428-1435

2007

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Evaluating sea cucumbers as extractive species for benthic bioremediation in mussel farms

Scientific reports, 2023-01, Vol.13 (1), p.1457-9, Article 1457

2023

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Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

Nature communications, 2017-06, Vol.8 (1), p.36-36, Article 36

2017

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Aedes aegypti: egg morphology and embryonic development

Parasites & vectors, 2021-10, Vol.14 (1), p.531-531, Article 531

2021

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Physical and chemical tagging methods for the sea urchin Paracentrotus lividus (Echinodermata: Echinoidea)

Scientia marina, 2022-09, Vol.86 (3), p.e038

2022

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Aedesaegypti: egg morphology and embryonic development

Parasites & vectors, 2021-10, Vol.14

2021

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How increasing temperature affects the innate immune system of sea urchin Paracentrotus lividus (Lamarck, 1816) reared in a RAS system

Comparative immunology reports, 2024-12, Vol.7, p.200174, Article 200174

2024

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Publisher Correction: Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

Nature methods, 2021-10, Vol.18 (10), p.1266-1266

2021

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Ring1B and Suv39h1 delineate distinct chromatin states at bivalent genes during early mouse lineage commitment

Development (Cambridge), 2010-08, Vol.137 (15), p.2483-2492

2010

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Methods for mapping 3D chromosome architecture

A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment

Understanding the glioblastoma immune microenvironment as basis for the development of new immunotherapeutic strategies

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

Polymer physics predicts the effects of structural variants on chromatin architecture

Complexity of chromatin folding is captured by the strings and binders switch model

Modifications of RNA polymerase II are pivotal in regulating gene expression states

Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

Differential plasticity and fate of brain-resident and recruited macrophages during the onset and resolution of neuroinflammation

Formation of new chromatin domains determines pathogenicity of genomic duplications

Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment

Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription

Three-dimensional genome architecture: players and mechanisms

Specialization of 3D genome structure in different cell types and states

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

Evaluating sea cucumbers as extractive species for benthic bioremediation in mussel farms

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

Aedes aegypti: egg morphology and embryonic development

Physical and chemical tagging methods for the sea urchin Paracentrotus lividus (Echinodermata: Echinoidea)

Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators

Aedesaegypti: egg morphology and embryonic development

How increasing temperature affects the innate immune system of sea urchin Paracentrotus lividus (Lamarck, 1816) reared in a RAS system

Publisher Correction: Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

Ring1B and Suv39h1 delineate distinct chromatin states at bivalent genes during early mouse lineage commitment

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