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Genome‐wide signatures of flowering adaptation to climate temperature: Regional analyses in a highly diverse native range of Arabidopsis thaliana

Plant, cell and environment, 2018-08, Vol.41 (8), p.1806-1820

2018

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Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization

BMC bioinformatics, 2006-02, Vol.7 (1), p.78-78, Article 78

2006

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GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Genome biology, 2007-01, Vol.8 (1), p.R3-R3

2007

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Functional Enrichment Analysis of Regulatory Elements

Biomedicines, 2022-03, Vol.10 (3), p.590

2022

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Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature

Blood, 2013-12, Vol.122 (24), p.3982-3992

2013

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CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D430

2014

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NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning

Nucleic acids research, 2015-07, Vol.43 (W1), p.W193

2015

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Notch-regulated miR-223 targets the aryl hydrocarbon receptor pathway and increases cytokine production in macrophages from rheumatoid arthritis patients

Scientific reports, 2016-02, Vol.6 (1), p.20223-20223, Article 20223

2016

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Functional analysis beyond enrichment: non-redundant reciprocal linkage of genes and biological terms

PloS one, 2011-09, Vol.6 (9), p.e24289-e24289

2011

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Quantification of miRNA-mRNA interactions

PloS one, 2012-02, Vol.7 (2), p.e30766-e30766

2012

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Highly proliferative primitive fetal liver hematopoietic stem cells are fueled by oxidative metabolic pathways

Stem cell research, 2015-11, Vol.15 (3), p.715-721

2015

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miRNA profiling during antigen-dependent T cell activation: A role for miR-132-3p

Scientific reports, 2017-06, Vol.7 (1), p.3508-8, Article 3508

2017

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Molecular Classification of Colorectal Cancer by microRNA Profiling: Correlation with the Consensus Molecular Subtypes (CMS) and Validation of miR-30b Targets

Cancers, 2022-10, Vol.14 (21), p.5175

2022

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Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors

PloS one, 2017-05, Vol.12 (5), p.e0178316-e0178316

2017

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GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W478

2012

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Integrated analysis of gene expression by Association Rules Discovery

BMC bioinformatics, 2006-02, Vol.7 (1), p.54-54, Article 54

2006

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A subpopulation of CD103posICOSpos Treg cells occurs at high frequency in lymphopenic mice and represents a lymph node specific differentiation stage

European journal of immunology, 2015-06, Vol.45 (6), p.1760-1771

2015

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bioNMF: a versatile tool for non-negative matrix factorization in biology

BMC bioinformatics, 2006-07, Vol.7 (1), p.366-366, Article 366

2006

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Proteopathogen, a protein database for studying Candida albicans - host interaction

Proteomics (Weinheim), 2009-10, Vol.9 (20), p.4664-4668

2009

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Moara: a Java library for extracting and normalizing gene and protein mentions

BMC bioinformatics, 2010-03, Vol.11 (1), p.157-157, Article 157

2010

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Cellular Gene Expression Survey of Vaccinia Virus Infection of Human HeLa Cells

Journal of Virology, 2003-06, Vol.77 (11), p.6493-6506

2003

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Gene expression modular analysis: an overview from the data mining perspective

Wiley interdisciplinary reviews. Data mining and knowledge discovery, 2011-09, Vol.1 (5), p.381-396

Pascual-Montano, Alberto

2011

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Discovering semantic features in the literature: a foundation for building functional associations

BMC bioinformatics, 2006-01, Vol.7 (1), p.41-41, Article 41

2006

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Microarray Analysis Reveals Characteristic Changes of Host Cell Gene Expression in Response to Attenuated Modified Vaccinia Virus Ankara Infection of Human HeLa Cells

Journal of Virology, 2004-06, Vol.78 (11), p.5820-5834

2004

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Assessment of protein set coherence using functional annotations

BMC bioinformatics, 2008-10, Vol.9 (1), p.444-444, Article 444

2008

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Genome‐wide signatures of flowering adaptation to climate temperature: Regional analyses in a highly diverse native range of Arabidopsis thaliana

Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Functional Enrichment Analysis of Regulatory Elements

Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature

CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning

Notch-regulated miR-223 targets the aryl hydrocarbon receptor pathway and increases cytokine production in macrophages from rheumatoid arthritis patients

Functional analysis beyond enrichment: non-redundant reciprocal linkage of genes and biological terms

Quantification of miRNA-mRNA interactions

Highly proliferative primitive fetal liver hematopoietic stem cells are fueled by oxidative metabolic pathways

miRNA profiling during antigen-dependent T cell activation: A role for miR-132-3p

Molecular Classification of Colorectal Cancer by microRNA Profiling: Correlation with the Consensus Molecular Subtypes (CMS) and Validation of miR-30b Targets

Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

Integrated analysis of gene expression by Association Rules Discovery

A subpopulation of CD103posICOSpos Treg cells occurs at high frequency in lymphopenic mice and represents a lymph node specific differentiation stage

bioNMF: a versatile tool for non-negative matrix factorization in biology

Proteopathogen, a protein database for studying Candida albicans - host interaction

Moara: a Java library for extracting and normalizing gene and protein mentions

Cellular Gene Expression Survey of Vaccinia Virus Infection of Human HeLa Cells

Gene expression modular analysis: an overview from the data mining perspective

Discovering semantic features in the literature: a foundation for building functional associations

Microarray Analysis Reveals Characteristic Changes of Host Cell Gene Expression in Response to Attenuated Modified Vaccinia Virus Ankara Infection of Human HeLa Cells

Assessment of protein set coherence using functional annotations

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