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The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA

BioSystems, 2024-05, Vol.239, p.105199, Article 105199

Ouzounis, Christos A.

2024

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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006541-e1006541

2018

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The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007981-e1007981

2020

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Microbial co-occurrence relationships in the human microbiome

PLoS computational biology, 2012-07, Vol.8 (7), p.e1002606-e1002606

2012

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Predicting network activity from high throughput metabolomics

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003123-e1003123

2013

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Ten years of pathway analysis: current approaches and outstanding challenges

PLoS computational biology, 2012-02, Vol.8 (2), p.e1002375-e1002375

2012

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The N-pact factor: evaluating the quality of empirical journals with respect to sample size and statistical power

PloS one, 2014-10, Vol.9 (10), p.e109019-e109019

2014

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732

2020

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Rise and demise of bioinformatics? Promise and progress

PLoS computational biology, 2012-04, Vol.8 (4), p.e1002487-e1002487

2012

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Mass Media and the Contagion of Fear: The Case of Ebola in America

PloS one, 2015-06, Vol.10 (6), p.e0129179-e0129179

2015

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Biology's transformation: from observation through experiment to computation

Bioinformatics advances, 2024-01, Vol.4 (1), p.vbae069-vbae069

2024

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Fast computation and applications of genome mappability

PloS one, 2012-01, Vol.7 (1), p.e30377-e30377

2012

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Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment

BioSystems, 2017-06, Vol.156-157, p.72-85

2017

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A recent origin of Orf3a from M protein across the coronavirus lineage arising by sharp divergence

Computational and structural biotechnology journal, 2020-01, Vol.18, p.4093-4102

Ouzounis, Christos A.

2020

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Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

mBio, 2021-01, Vol.12 (1)

2021

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Statistical methods for detecting differentially abundant features in clinical metagenomic samples

PLoS computational biology, 2009-04, Vol.5 (4), p.e1000352-e1000352

2009

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Travelling to scientific meetings is a mission, not a vacation

EMBO reports, 2020-04, Vol.21 (4), p.e50388-n/a

2020

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How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations

PloS one, 2012-11, Vol.7 (11), p.e47523-e47523

2012

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Disentangling the complexity of low complexity proteins

Briefings in bioinformatics, 2020-03, Vol.21 (2), p.458-472

2020

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The altmetrics collection

PloS one, 2012-11, Vol.7 (11), p.e48753-e48753

2012

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Fast reconstruction of compact context-specific metabolic network models

PLoS computational biology, 2014-01, Vol.10 (1), p.e1003424-e1003424

2014

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The bioinformatics wealth of nations

Bioinformatics, 2020-05, Vol.36 (9), p.2963-2965

2020

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Dominance and leadership in research activities: Collaboration between countries of differing human development is reflected through authorship order and designation as corresponding authors in scientific publications

PloS one, 2017-08, Vol.12 (8), p.e0182513-e0182513

2017

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A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

PLoS computational biology, 2014-12, Vol.10 (12), p.e1004016-e1004016

2014

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Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005385-e1005385

2017

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The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

Microbial co-occurrence relationships in the human microbiome

Predicting network activity from high throughput metabolomics

Ten years of pathway analysis: current approaches and outstanding challenges

The N-pact factor: evaluating the quality of empirical journals with respect to sample size and statistical power

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Rise and demise of bioinformatics? Promise and progress

Mass Media and the Contagion of Fear: The Case of Ebola in America

Biology's transformation: from observation through experiment to computation

Fast computation and applications of genome mappability

Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment

A recent origin of Orf3a from M protein across the coronavirus lineage arising by sharp divergence

Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

Travelling to scientific meetings is a mission, not a vacation

How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations

Disentangling the complexity of low complexity proteins

The altmetrics collection

Fast reconstruction of compact context-specific metabolic network models

The bioinformatics wealth of nations

Dominance and leadership in research activities: Collaboration between countries of differing human development is reflected through authorship order and designation as corresponding authors in scientific publications

A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation

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