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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Proteomes, 2021-03, Vol.9 (1), p.15

Orsburn, Benjamin C

2021

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Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Journal of proteome research, 2023-03, Vol.22 (3), p.1003-1008

Orsburn, Benjamin C.

2023

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Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Proteomics (Weinheim), 2024-03, Vol.24 (5), p.e2300314-n/a

Orsburn, Benjamin C.

2024

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

Journal of proteome research, 2023-11, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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The Carrier Proteome Should Be Reassessed for Each Mass Analyzer Architecture

Journal of the American Society for Mass Spectrometry, 2024-08, Vol.35 (8), p.1644-1646

Orsburn, Benjamin C.

2024

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

Journal of proteome research, 2023-12, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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The Open Pesticide Transition Library (oPestTL)

Journal of the American Society for Mass Spectrometry, 2022-10, Vol.33 (10), p.1813-1815

Orsburn, Benjamin C.

2022

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Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Nature communications, 2022-11, Vol.13 (1), p.7246-14, Article 7246

2022

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Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Journal of the American Society for Mass Spectrometry, 2023-12, Vol.34 (12), p.2615-2619

2023

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Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

Proteomes, 2021-07, Vol.9 (3), p.34

Orsburn, Benjamin C

2021

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The Cannabis Proteome Draft Map Project

International journal of molecular sciences, 2020-01, Vol.21 (3), p.965

2020

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Analyzing Posttranslational Modifications in Single Cells

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2817, p.145

Orsburn, Benjamin C

2024

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Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales

PLoS pathogens, 2020-08, Vol.16 (8), p.e1008776

2020

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Tenofovir activation is diminished in the brain and liver of creatine kinase brain-type knockout mice

Drug metabolism and pharmacokinetics, 2024-04, Vol.55, p.100956, Article 100956

2024

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Biotransformation of Efavirenz and Proteomic Analysis of Cytochrome P450s and UDP-Glucuronosyltransferases in Mouse, Macaque, and Human Brain-Derived In Vitro Systems

Drug metabolism and disposition, 2023-04, Vol.51 (4), p.521-531

2023

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IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (21), p.E4767-E4776

2018

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Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Molecular & cellular proteomics, 2017-04, Vol.16 (4), p.S230-S243

2017

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Sialylated keratan sulfates on MUC5B are Siglec-8 ligands in the human esophagus

Glycobiology (Oxford), 2024-08, Vol.34 (10)

2024

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Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Drug metabolism and disposition, 2023-03, Vol.51 (3), p.350-359

2023

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Human brain sialoglycan ligand for CD33, a microglial inhibitory Siglec implicated in Alzheimer’s disease

The Journal of biological chemistry, 2022-06, Vol.298 (6), p.101960, Article 101960

2022

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Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

Journal of the American Society for Mass Spectrometry, 2024-02, Vol.35 (2), p.185-196

2024

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The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes

Journal of the American Chemical Society, 2024-07, Vol.146 (26), p.17801-17816

2024

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The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Biochimica et biophysica acta. Gene regulatory mechanisms, 2023-06, Vol.1866 (2), p.194929-194929, Article 194929

2023

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Increased Protein Insolubility in Brains From a Subset of Patients With Schizophrenia

The American journal of psychiatry, 2019-09, Vol.176 (9), p.730-743

2019

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A Multiplexed Single-Cell Proteomic Workflow Applicable to Drug Treatment Studies

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2823, p.1

2024

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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

The Carrier Proteome Should Be Reassessed for Each Mass Analyzer Architecture

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

The Open Pesticide Transition Library (oPestTL)

Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

The Cannabis Proteome Draft Map Project

Analyzing Posttranslational Modifications in Single Cells

Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales

Tenofovir activation is diminished in the brain and liver of creatine kinase brain-type knockout mice

Biotransformation of Efavirenz and Proteomic Analysis of Cytochrome P450s and UDP-Glucuronosyltransferases in Mouse, Macaque, and Human Brain-Derived In Vitro Systems

IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Sialylated keratan sulfates on MUC5B are Siglec-8 ligands in the human esophagus

Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Human brain sialoglycan ligand for CD33, a microglial inhibitory Siglec implicated in Alzheimer’s disease

Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Increased Protein Insolubility in Brains From a Subset of Patients With Schizophrenia

A Multiplexed Single-Cell Proteomic Workflow Applicable to Drug Treatment Studies

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