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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Proteomes, 2021-03, Vol.9 (1), p.15

Orsburn, Benjamin C

2021

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Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Nature communications, 2022-11, Vol.13 (1), p.7246-7246, Article 7246

2022

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Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

Proteomes, 2021-07, Vol.9 (3), p.34

Orsburn, Benjamin C

2021

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Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Molecular & cellular proteomics, 2017-04, Vol.16 (4), p.S230-S243

2017

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Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Proteomics (Weinheim), 2024-03, Vol.24 (5), p.e2300314-n/a

Orsburn, Benjamin C.

2024

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Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Journal of proteome research, 2023-03, Vol.22 (3), p.1003-1008

Orsburn, Benjamin C.

2023

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Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales

PLoS pathogens, 2020-08, Vol.16 (8), p.e1008776

2020

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

Journal of proteome research, 2023-12, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

Journal of proteome research, 2023-11, Vol.22 (12), p.3703-3713

Orsburn, Benjamin C

2023

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The Open Pesticide Transition Library (oPestTL)

Journal of the American Society for Mass Spectrometry, 2022-10, Vol.33 (10), p.1813-1815

Orsburn, Benjamin C.

2022

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Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma

Cancers, 2021-07, Vol.13 (15), p.3754

2021

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Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Journal of the American Society for Mass Spectrometry, 2023-12, Vol.34 (12), p.2615-2619

2023

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Cocaine regulates antiretroviral therapy CNS access through pregnane-x receptor-mediated drug transporter and metabolizing enzyme modulation at the blood brain barrier

Fluids and barriers of the CNS, 2024-01, Vol.21 (1), p.5-5, Article 5

2024

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Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics

Proteomes, 2022-01, Vol.10 (1), p.3

2022

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Chorioamnionitis disrupts erythropoietin and melatonin homeostasis through the placental-fetal-brain axis during critical developmental periods

Frontiers in physiology, 2023, Vol.14, p.1201699-1201699

2023

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Biotransformation of Efavirenz and Proteomic Analysis of Cytochrome P450s and UDP-Glucuronosyltransferases in Mouse, Macaque, and Human Brain-Derived In Vitro Systems

Drug metabolism and disposition, 2023-04, Vol.51 (4), p.521-531

2023

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IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (21), p.E4767-E4776

2018

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Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Drug metabolism and disposition, 2023-03, Vol.51 (3), p.350-359

2023

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Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

Journal of the American Society for Mass Spectrometry, 2024-02, Vol.35 (2), p.185-196

2024

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Human brain sialoglycan ligand for CD33, a microglial inhibitory Siglec implicated in Alzheimer’s disease

The Journal of biological chemistry, 2022-06, Vol.298 (6), p.101960, Article 101960

2022

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Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface

Oncotarget, 2016-12, Vol.7 (52), p.86948-86971

2016

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The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Biochimica et biophysica acta. Gene regulatory mechanisms, 2023-06, Vol.1866 (2), p.194929-194929, Article 194929

2023

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EstG is a novel esterase required for cell envelope integrity in Caulobacter

Current biology, 2023-01, Vol.33 (2), p.228-240.e7

2023

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Proteome Discoverer-A Community Enhanced Data Processing Suite for Protein Informatics

Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry

Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric

Host Plants Indirectly Influence Plant Virus Transmission by Altering Gut Cysteine Protease Activity of Aphid Vectors

Beyond the model organism—Mechanistic analysis of protein post‐translational modifications is ready for all challengers

Time-of-Flight Fragmentation Spectra Generated by the Proteomic Analysis of Single Human Cells Do Not Exhibit Atypical Fragmentation Patterns

Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRAS G12D Inhibitor MRTX1133

Metabolomic, Proteomic, and Single-Cell Proteomic Analysis of Cancer Cells Treated with the KRASG12D Inhibitor MRTX1133

The Open Pesticide Transition Library (oPestTL)

Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma

Simple Tool for Rapidly Assessing the Quality of Multiplexed Single Cell Proteomics Data

Cocaine regulates antiretroviral therapy CNS access through pregnane-x receptor-mediated drug transporter and metabolizing enzyme modulation at the blood brain barrier

Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics

Chorioamnionitis disrupts erythropoietin and melatonin homeostasis through the placental-fetal-brain axis during critical developmental periods

Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants

Gene expression profiling of 49 human tumor xenografts from in vitro culture through multiple in vivo passages--strategies for data mining in support of therapeutic studies

Biotransformation of Efavirenz and Proteomic Analysis of Cytochrome P450s and UDP-Glucuronosyltransferases in Mouse, Macaque, and Human Brain-Derived In Vitro Systems

IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Achieving a Deeper Understanding of Drug Metabolism and Responses Using Single-Cell Technologies

Spatial Heterogeneity of Brain Lipids in SIV-Infected Macaques Treated with Antiretroviral Therapy

Human brain sialoglycan ligand for CD33, a microglial inhibitory Siglec implicated in Alzheimer’s disease

Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

EstG is a novel esterase required for cell envelope integrity in Caulobacter

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