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Gene regulatory network inference using fused LASSO on multiple data sets

Scientific reports, 2016-02, Vol.6 (1), p.20533-20533, Article 20533

2016

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Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

The Plant cell, 2015-03, Vol.27 (3), p.485-512

2015

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Widening the landscape of transcriptional regulation of green algal photoprotection

Nature communications, 2023-05, Vol.14 (1), p.2687-2687, Article 2687

2023

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Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

Plant physiology (Bethesda), 2021-12, Vol.187 (4), p.2419-2434

2021

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A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

International journal of molecular sciences, 2020-01, Vol.21 (2), p.474

2020

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A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis

Plant physiology (Bethesda), 2016-10, Vol.172 (2), p.1334-1351

2016

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Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

Frontiers in plant science, 2017-12, Vol.8, p.2152-2152

2017

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Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession

International journal of molecular sciences, 2022-10, Vol.23 (20), p.12087

2022

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Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation

International journal of molecular sciences, 2021-04, Vol.22 (9), p.4790

2021

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A network property necessary for concentration robustness

Nature communications, 2016-10, Vol.7 (1), p.13255-13255, Article 13255

2016

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Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

Plant signaling & behavior, 2012-09, Vol.7 (9), p.1095-1102

2012

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Network-based segmentation of biological multivariate time series

PloS one, 2013-05, Vol.8 (5), p.e62974-e62974

2013

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Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Plant direct, 2019-11, Vol.3 (11), p.e00186-n/a

2019

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Computational Approaches to Study Gene Regulatory Networks

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1629, p.283

2017

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Segmentation of biological multivariate time-series data

Scientific reports, 2015-03, Vol.5 (1), p.8937-8937, Article 8937

2015

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Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

The Plant cell, 2015-07, Vol.27 (7), p.1839-1856

2015

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Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis

The New phytologist, 2020-01, Vol.225 (2), p.754-768

2020

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Low‐temperature tolerance of the Antarctic species Deschampsia antarctica: A complex metabolic response associated with nutrient remobilization

Plant, cell and environment, 2020-06, Vol.43 (6), p.1376-1393

2020

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Differential metabolic and coexpression networks of plant metabolism

Trends in plant science, 2015-05, Vol.20 (5), p.266-268

2015

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A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis1

Plant physiology (Bethesda), 2016-08, Vol.172 (2), p.1334-1351

2016

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AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome

The Plant journal : for cell and molecular biology, 2018-10, Vol.96 (2), p.404-420

2018

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PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana

Molecular bioSystems, 2012-04, Vol.8 (4), p.1121-1127

2012

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Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Metabolomics, 2019-04, Vol.15 (4), p.46-13, Article 46

2019

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PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thalianaElectronic supplementary information (ESI) available: File 1: Including the description of experiments which have been used in the paper. The file includes the names of all microarray gene expression data together with the references which were used in this paper. File 2: Genes putatively involved in the crosstalk of different sets of signals. Microarrays selected for the analysis invo

2012-04

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Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

Plant Signaling & Behavior, 2012, Vol.7 (9), p.1095-1102

2012

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Gene regulatory network inference using fused LASSO on multiple data sets

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

Widening the landscape of transcriptional regulation of green algal photoprotection

Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis

Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession

Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation

A network property necessary for concentration robustness

Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

Network-based segmentation of biological multivariate time series

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Computational Approaches to Study Gene Regulatory Networks

Segmentation of biological multivariate time-series data

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis

Low‐temperature tolerance of the Antarctic species Deschampsia antarctica: A complex metabolic response associated with nutrient remobilization

Differential metabolic and coexpression networks of plant metabolism

A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis1

AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome

PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana

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