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The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007981-e1007981

2020

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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006541-e1006541

2018

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Microbial co-occurrence relationships in the human microbiome

PLoS computational biology, 2012-07, Vol.8 (7), p.e1002606-e1002606

2012

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Predicting network activity from high throughput metabolomics

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003123-e1003123

2013

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Ten years of pathway analysis: current approaches and outstanding challenges

PLoS computational biology, 2012-02, Vol.8 (2), p.e1002375-e1002375

2012

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The N-pact factor: evaluating the quality of empirical journals with respect to sample size and statistical power

PloS one, 2014-10, Vol.9 (10), p.e109019-e109019

2014

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732

2020

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Mass Media and the Contagion of Fear: The Case of Ebola in America

PloS one, 2015-06, Vol.10 (6), p.e0129179-e0129179

2015

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Fast computation and applications of genome mappability

PloS one, 2012-01, Vol.7 (1), p.e30377-e30377

2012

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Statistical methods for detecting differentially abundant features in clinical metagenomic samples

PLoS computational biology, 2009-04, Vol.5 (4), p.e1000352-e1000352

2009

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How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations

PloS one, 2012-11, Vol.7 (11), p.e47523-e47523

2012

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Fast reconstruction of compact context-specific metabolic network models

PLoS computational biology, 2014-01, Vol.10 (1), p.e1003424-e1003424

2014

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The altmetrics collection

PloS one, 2012-11, Vol.7 (11), p.e48753-e48753

2012

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A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

PLoS computational biology, 2014-12, Vol.10 (12), p.e1004016-e1004016

2014

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Dominance and leadership in research activities: Collaboration between countries of differing human development is reflected through authorship order and designation as corresponding authors in scientific publications

PloS one, 2017-08, Vol.12 (8), p.e0182513-e0182513

2017

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Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005385-e1005385

2017

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A novel bibliometric index with a simple geometric interpretation

PloS one, 2018-07, Vol.13 (7), p.e0200098-e0200098

2018

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Co-authorship and bibliographic coupling network effects on citations

PloS one, 2014-06, Vol.9 (6), p.e99502-e99502

2014

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Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006867

2019

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Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

PloS one, 2011-01, Vol.6 (1), p.e14556-e14556

2011

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OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006835-e1006835

2019

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Fair ranking of researchers and research teams

PloS one, 2018-04, Vol.13 (4), p.e0195509-e0195509

2018

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A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes

PLoS computational biology, 2009-08, Vol.5 (8), p.e1000465-e1000465

2009

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A 10-year case study on the changing determinants of university student satisfaction in the UK

PloS one, 2018-02, Vol.13 (2), p.e0192976-e0192976

2018

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VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011422-e1011422

2023

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The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Microbial co-occurrence relationships in the human microbiome

Predicting network activity from high throughput metabolomics

Ten years of pathway analysis: current approaches and outstanding challenges

The N-pact factor: evaluating the quality of empirical journals with respect to sample size and statistical power

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Mass Media and the Contagion of Fear: The Case of Ebola in America

Fast computation and applications of genome mappability

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations

Fast reconstruction of compact context-specific metabolic network models

The altmetrics collection

A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

Dominance and leadership in research activities: Collaboration between countries of differing human development is reflected through authorship order and designation as corresponding authors in scientific publications

Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation

A novel bibliometric index with a simple geometric interpretation

Co-authorship and bibliographic coupling network effects on citations

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions

Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling

Fair ranking of researchers and research teams

A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes

A 10-year case study on the changing determinants of university student satisfaction in the UK

VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models

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