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Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis

Scientific reports, 2022-01, Vol.12 (1), p.1128-10, Article 1128

2022

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Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity

Bioinformatics (Oxford, England), 2017-04, Vol.33 (7), p.1014-1020

2017

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The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds

Journal of allergy and clinical immunology, 2021-04, Vol.147 (4), p.1154-1163

2021

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InterProSurf: a web server for predicting interacting sites on protein surfaces

Bioinformatics, 2007-12, Vol.23 (24), p.3397-3399

2007

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The updated Structural Database of Allergenic Proteins (SDAP 2.0) provides 3D models for allergens and incorporated bioinformatics tools

The journal of allergy and clinical immunology. Global, 2023-11, Vol.2 (4), p.100162, Article 100162

2023

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Still SDAPing Along: 20 Years of the Structural Database of Allergenic Proteins

Frontiers in allergy, 2022-03, Vol.3, p.863172-863172

2022

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Functional classification of protein toxins as a basis for bioinformatic screening

Scientific reports, 2017-10, Vol.7 (1), p.13940-11, Article 13940

2017

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Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences

Bioinformatics and biology insights, 2009, Vol.2009 (3), p.BBI.S2745

2009

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Validation of a Phage Display and Computational Algorithm by Mapping a Conformational Epitope of Bla g 2

International archives of allergy and immunology, 2012-03, Vol.157 (4), p.323-330

2012

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Design of peptides with high affinity binding to a monoclonal antibody as a basis for immunotherapy

Peptides (New York, N.Y. : 1980), 2021-11, Vol.145, p.170628-170628, Article 170628

2021

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Thermodynamics of Phosphopeptide Tethering to BRCT: The Structural Minima for Inhibitor Design

Journal of the American Chemical Society, 2007-09, Vol.129 (35), p.10658-10659

2007

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Distinguishing allergens from non-allergenic homologues using Physical–Chemical Property (PCP) motifs

Molecular immunology, 2018-07, Vol.99, p.1-8

2018

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Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6

Clinical and experimental allergy, 2016-08, Vol.46 (8), p.1120-1128

2016

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Alanine Scanning of the Unstructured Region of Ara h 2 and of a Related Mimotope Reveals Critical Amino Acids for IgE Binding

Molecular nutrition & food research, 2023-11, Vol.67 (22), p.e2300134

2023

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IgE binding to linear epitopes of Ara h 2 in peanut allergic preschool children undergoing oral Immunotherapy

Pediatric allergy and immunology, 2019-12, Vol.30 (8), p.817-823

2019

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Synthetic proteins for COVID-19 diagnostics

Peptides (New York, N.Y. : 1980), 2021-09, Vol.143, p.170583-170583, Article 170583

2021

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Western equine encephalitis virus: evolutionary analysis of a declining alphavirus based on complete genome sequences

Journal of virology, 2014-08, Vol.88 (16), p.9260-9267

2014

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Automated detection of conformational epitopes using phage display Peptide sequences

Bioinformatics and biology insights, 2009-07, Vol.3, p.71-81

2009

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Engineering proteins with enhanced mechanical stability by force-specific sequence motifs

Proteins, structure, function, and bioinformatics, 2012-05, Vol.80 (5), p.1308-1315

2012

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Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces

Journal of molecular modeling, 2007-11, Vol.13 (11), p.1157-1167

2007

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Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes

Molecular immunology, 2008-08, Vol.45 (14), p.3740-3747

2008

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Structural analysis of linear and conformational epitopes of allergens

Regulatory toxicology and pharmacology, 2009-08, Vol.54 (3), p.S11-S19

2009

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Dissecting the Thermodynamics and Cooperativity of Ligand Binding in Cytochrome P450eryF

Journal of the American Chemical Society, 2007-02, Vol.129 (7), p.2015-2024

2007

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Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts

Journal of structural biology, 2008-01, Vol.161 (1), p.18-30

2008

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Determining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis virus

Journal of molecular modeling, 2006-09, Vol.12 (6), p.921-929

2006

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Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis

Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity

The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds

InterProSurf: a web server for predicting interacting sites on protein surfaces

The updated Structural Database of Allergenic Proteins (SDAP 2.0) provides 3D models for allergens and incorporated bioinformatics tools

Still SDAPing Along: 20 Years of the Structural Database of Allergenic Proteins

Functional classification of protein toxins as a basis for bioinformatic screening

Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences

Validation of a Phage Display and Computational Algorithm by Mapping a Conformational Epitope of Bla g 2

Design of peptides with high affinity binding to a monoclonal antibody as a basis for immunotherapy

Thermodynamics of Phosphopeptide Tethering to BRCT: The Structural Minima for Inhibitor Design

Distinguishing allergens from non-allergenic homologues using Physical–Chemical Property (PCP) motifs

Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6

Alanine Scanning of the Unstructured Region of Ara h 2 and of a Related Mimotope Reveals Critical Amino Acids for IgE Binding

IgE binding to linear epitopes of Ara h 2 in peanut allergic preschool children undergoing oral Immunotherapy

Synthetic proteins for COVID-19 diagnostics

Western equine encephalitis virus: evolutionary analysis of a declining alphavirus based on complete genome sequences

Automated detection of conformational epitopes using phage display Peptide sequences

Engineering proteins with enhanced mechanical stability by force-specific sequence motifs

Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces

Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes

Structural analysis of linear and conformational epitopes of allergens

Dissecting the Thermodynamics and Cooperativity of Ligand Binding in Cytochrome P450eryF

Co-localization of glyceraldehyde-3-phosphate dehydrogenase with ferredoxin-NADP reductase in pea leaf chloroplasts

Determining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis virus

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