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BioRuby: bioinformatics software for the Ruby programming language

Bioinformatics, 2010-10, Vol.26 (20), p.2617-2619

2010

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Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

Nucleic acids research, 2008-11, Vol.36 (20), p.6386-6395

2008

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Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

Nucleic acids research, 2006-01, Vol.34 (14), p.3917-3928

2006

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CyanoBase: the cyanobacteria genome database update 2010

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D379-D381

2010

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CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D666-D670

2014

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DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

Nucleic acids research, 2004-01, Vol.32 (Database issue), p.D75-77

2004

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TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W706-W711

2010

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones

PLoS biology, 2004-06, Vol.2 (6), p.e162-856

2004

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Improvement of PSORT II Protein Sorting Prediction for Mammalian Proteins

Genome Informatics, 2002, Vol.13, pp.441-442

2002

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Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

Bioinformatics (Oxford, England), 1999-12, Vol.15 (12), p.987-993

1999

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H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational

Nucleic acids research, 2007-01, Vol.35 (Database issue), p.D104-D109

2007

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BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

Journal of biomedical semantics, 2014-02, Vol.5 (1), p.5-5

2014

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Implementation of linked data in the life sciences at BioHackathon 2011

Journal of biomedical semantics, 2015-01, Vol.6 (1), p.3-3, Article 3

2015

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BioRuby: Open-Source Bioinformatics Library

Genome Informatics, 2003, Vol.14, pp.629-630

2003

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BioRuby: Object Oriented Open Source Library for Bioinformatics

Genome Informatics, 2002, Vol.13, pp.248-249

2002

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Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Nucleic acids research, 2005-01, Vol.33 (8), p.2355-2363

2005

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Quantitative Estimation of Cross-Hybridization in DNA Microarrays Based on a Linear Model

Genome Informatics, 2000, Vol.11, pp.231-232

2000

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Modeling Transcriptional Units of E. coli Genes Using HMM

Genome Informatics, 1998, Vol.9, pp.349-350

1998

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Genome-Scale Gene Expression Profiles Mapped onto the Pathway and Genome Maps in KEGG

Genome Informatics, 1998, Vol.9, pp.230-231

1998

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Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG

Genome Informatics, 1999, Vol.10, pp.94-103

1999

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The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows

Journal of biomedical semantics, 2010, Vol.1 (1), p.8-8

2010

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Introduction to the practical analysis of DNA microarray data

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, 2003-02, Vol.48 (2), p.167

2003

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Complete Genome Sequence of Bradyrhizobium sp. S23321

Microbes and environments, 2012-07, Vol.27 (3), p.306

2012

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Cluster analysis of genome-wide expression profiles to predict gene functions with KEGG

Nature genetics, 1999-11, Vol.23 (S3), p.33-34

1999

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Natural Language Query Processing for Life Science Knowledge: Position Paper

Active Media Technology, p.158-165

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BioRuby: bioinformatics software for the Ruby programming language

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

CyanoBase: the cyanobacteria genome database update 2010

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes

DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Improvement of PSORT II Protein Sorting Prediction for Mammalian Proteins

Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

Implementation of linked data in the life sciences at BioHackathon 2011

BioRuby: Open-Source Bioinformatics Library

BioRuby: Object Oriented Open Source Library for Bioinformatics

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Quantitative Estimation of Cross-Hybridization in DNA Microarrays Based on a Linear Model

Modeling Transcriptional Units of E. coli Genes Using HMM

Genome-Scale Gene Expression Profiles Mapped onto the Pathway and Genome Maps in KEGG

Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows

Introduction to the practical analysis of DNA microarray data

Complete Genome Sequence of Bradyrhizobium sp. S23321

Cluster analysis of genome-wide expression profiles to predict gene functions with KEGG

Natural Language Query Processing for Life Science Knowledge: Position Paper

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