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Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]

F1000 research, 2021, Vol.10, p.33-33

2021

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Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

Frontiers in microbiology, 2020-10, Vol.11, p.550420-550420

2020

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A data management infrastructure for the integration of imaging and omics data in life sciences

BMC bioinformatics, 2022-02, Vol.23 (1), p.61-61, Article 61

2022

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Medizinische Zwillingsforschung in Deutschland

Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 2021, Vol.64 (10), p.1298-1306

2021

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Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses

Frontiers in immunology, 2020-12, Vol.11, p.606338-606338

2020

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Cladribine treatment specifically affects peripheral blood memory B cell clones and clonal expansion in multiple sclerosis patients

Frontiers in immunology, 2023-03, Vol.14, p.1133967-1133967

2023

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Genetic evolution of in situ follicular neoplasia to aggressive B-cell lymphoma of germinal center subtype

Haematologica (Roma), 2020-08, Vol.106 (10), p.2673-2681

2020

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nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

PLoS computational biology, 2024-07, Vol.20 (7), p.e1012265

2024

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Ten simple rules for providing effective bioinformatics research support

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007531

2020

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Clinical and Genetic Tumor Characteristics of Responding and Non-Responding Patients to PD-1 Inhibition in Hepatocellular Carcinoma

Cancers, 2020-12, Vol.12 (12), p.3830

2020

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In silico design of targeted SRM-based experiments

BMC bioinformatics, 2012, Vol.13 Suppl 16 (Suppl 16), p.S8-S8, Article S8

2012

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Absence of Non-Canonical, Inhibitory MYD88 Splice Variants in B Cell Lymphomas Correlates With Sustained NF-κB Signaling

Frontiers in immunology, 2021-06, Vol.12, p.616451

2021

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qPortal: A platform for data-driven biomedical research

PloS one, 2018-01, Vol.13 (1), p.e0191603-e0191603

2018

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Functionally-instructed modifiers of response to ATR inhibition in experimental glioma

Journal of experimental & clinical cancer research, 2024-03, Vol.43 (1), p.77-77, Article 77

2024

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Contribution of mTOR and PTEN to Radioresistance in Sporadic and NF2-Associated Vestibular Schwannomas: A Microarray and Pathway Analysis

Cancers, 2020-01, Vol.12 (1), p.177

2020

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Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy

Cancer cell international, 2022-10, Vol.22 (1), p.1-311, Article 311

2022

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Comprehensive Analysis of Human Cytomegalovirus- and HIV-Mediated Plasma Membrane Remodeling in Macrophages

mBio, 2021-08, Vol.12 (4), p.e0177021-e0177021

2021

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Measles Virus-Based Treatments Trigger a Pro-inflammatory Cascade and a Distinctive Immunopeptidome in Glioblastoma

Molecular therapy. Oncolytics, 2019-03, Vol.12, p.147-161

2019

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Potent Antitumor Activity of Liposomal Irinotecan in an Organoid- and CRISPR-Cas9-Based Murine Model of Gallbladder Cancer

Cancers, 2019-11, Vol.11 (12), p.1904

2019

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ODGI: understanding pangenome graphs

Bioinformatics, 2022-06, Vol.38 (13), p.3319-3326

2022

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Tools for Label-free Peptide Quantification

Molecular & cellular proteomics, 2013-03, Vol.12 (3), p.549-556

2013

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Platforms and Pipelines for Proteomics Data Analysis and Management

Advances in experimental medicine and biology, 2016, Vol.919, p.203-215

2016

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Twin research in Germany

Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 2021-10, Vol.64 (10), p.1298-1306

2021

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OpenMS: a flexible open-source software platform for mass spectrometry data analysis

Nature methods, 2016-09, Vol.13 (9), p.741-748

2016

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Subtle microbial community changes despite rapid glyphosate degradation in microcosms with four German agricultural soils

Applied soil ecology : a section of Agriculture, ecosystems & environment, 2024-06, Vol.198, p.105381, Article 105381

2024

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Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

A data management infrastructure for the integration of imaging and omics data in life sciences

Medizinische Zwillingsforschung in Deutschland

Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses

Cladribine treatment specifically affects peripheral blood memory B cell clones and clonal expansion in multiple sclerosis patients

Genetic evolution of in situ follicular neoplasia to aggressive B-cell lymphoma of germinal center subtype

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

Ten simple rules for providing effective bioinformatics research support

Clinical and Genetic Tumor Characteristics of Responding and Non-Responding Patients to PD-1 Inhibition in Hepatocellular Carcinoma

In silico design of targeted SRM-based experiments

Absence of Non-Canonical, Inhibitory MYD88 Splice Variants in B Cell Lymphomas Correlates With Sustained NF-κB Signaling

qPortal: A platform for data-driven biomedical research

Functionally-instructed modifiers of response to ATR inhibition in experimental glioma

Contribution of mTOR and PTEN to Radioresistance in Sporadic and NF2-Associated Vestibular Schwannomas: A Microarray and Pathway Analysis

Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy

Comprehensive Analysis of Human Cytomegalovirus- and HIV-Mediated Plasma Membrane Remodeling in Macrophages

Measles Virus-Based Treatments Trigger a Pro-inflammatory Cascade and a Distinctive Immunopeptidome in Glioblastoma

Potent Antitumor Activity of Liposomal Irinotecan in an Organoid- and CRISPR-Cas9-Based Murine Model of Gallbladder Cancer

ODGI: understanding pangenome graphs

Tools for Label-free Peptide Quantification

Platforms and Pipelines for Proteomics Data Analysis and Management

Twin research in Germany

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

Subtle microbial community changes despite rapid glyphosate degradation in microcosms with four German agricultural soils

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