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Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

Scientific reports, 2022-07, Vol.12 (1), p.11757-11757, Article 11757

2022

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Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements

Database : the journal of biological databases and curation, 2022-08, Vol.2022

2022

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Unfolding is the driving force for mitochondrial import and degradation of the Parkinson's disease-related protein DJ-1

Journal of cell science, 2021-11, Vol.134 (22)

2021

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Protein structure prediction using a variety of profile libraries and 3D verification

Proteins, structure, function, and bioinformatics, 2005, Vol.61 (S7), p.114-121

2005

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MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts

Bioinformatics, 2021-12, Vol.38 (1), p.273-274

2021

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2P268 Protein binding pocket and ligand shape comparison(22A. Bioinformatics: Structural genomics,Poster)

Seibutsu Butsuri, 2013/09/13, Vol.53(supplement1-2), pp.S203

2013

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Atg15 is a vacuolar phospholipase that disintegrates organelle membranes

Cell reports (Cambridge), 2023-12, Vol.42 (12), p.113567-113567, Article 113567

2023

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Porin Associates with Tom22 to Regulate the Mitochondrial Protein Gate Assembly

Molecular cell, 2019-03, Vol.73 (5), p.1044-1055.e8

2019

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A multipoint guidance mechanism for β-barrel folding on the SAM complex

Nature structural & molecular biology, 2023-02, Vol.30 (2), p.176-187

2023

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Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

Nucleic acids research, 2006-01, Vol.34 (14), p.3917-3928

2006

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The origin of esterase activity of Parkinson's disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA

The Journal of biological chemistry, 2024-07, Vol.300 (7), p.107476, Article 107476

2024

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Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex

Nature structural & molecular biology, 2023-02, Vol.30 (2), p.233-233

2023

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Thermodynamic and kinetic determinants of Thermotoga maritima cold shock protein stability: A structural and dynamic analysis

Proteins, structure, function, and bioinformatics, 2008-05, Vol.71 (2), p.655-669

2008

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High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low ΔΔCp of unfolding

Protein engineering, 2001-12, Vol.14 (12), p.961-966

2001

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Molecular Dynamics Simulation of Dimeric and Monomeric Forms of Human Prion Protein: Insight into Dynamics and Properties

Biophysical journal, 2003-08, Vol.85 (2), p.1176-1185

2003

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1P-236 Virtual screening to separate active ligands from decoys using MD simulation and concavity shape comparing(Bioinformatics:Structural genomics, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2009/09/20, Vol.49(supplement), pp.S99

2009

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1P-236 MDシミュレーションとタンパク質のコンキャビティ形状比較を用いたバーチャルスクリーニング(生命情報科学-構造ゲノミクス,第47回日本生物物理学会年会)

生物物理, 2009/09/20, Vol.49(supplement), pp.S99

2009

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SAHG, a comprehensive database of predicted structures of all human proteins

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D487-D493

2011

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2P-297 Validation of statistical functions for evaluating protein structural models(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2008/10/25, Vol.48(supplement), pp.S121

2008

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2P-297 タンパク質立体構造予測モデルの評価関数の検討(生命情報科学・構造ゲノミクス,第46回日本生物物理学会年会)

生物物理, 2008/10/25, Vol.48(supplement), pp.S121

2008

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Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Nucleic acids research, 2005-01, Vol.33 (8), p.2355-2363

2005

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Dynamic and Structural Analysis of Hyperthermophilic Cold Shock Protein Stability

Kōbunshi ronbunshū (Tokyo), 2010, Vol.67 (3), p.151-163

2010

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CASP8 Meeting Report

Seibutsu Butsuri, 2009, Vol.49(3), pp.151-152

2009

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CASP8 Meeting Report

Seibutsu butsuri = Biophysics, 2009, Vol.49 (3), p.151-152

2009

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Urea-Induced Unfolding and Conformational Stability of 3-Isopropylmalate Dehydrogenase from the Thermophile Thermus thermophilus and Its Mesophilic Counterpart from Escherichia coli

Biochemistry (Easton), 1999-01, Vol.38 (4), p.1332-1337

1999

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Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements

Unfolding is the driving force for mitochondrial import and degradation of the Parkinson's disease-related protein DJ-1

Protein structure prediction using a variety of profile libraries and 3D verification

MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts

2P268 Protein binding pocket and ligand shape comparison(22A. Bioinformatics: Structural genomics,Poster)

Atg15 is a vacuolar phospholipase that disintegrates organelle membranes

Porin Associates with Tom22 to Regulate the Mitochondrial Protein Gate Assembly

A multipoint guidance mechanism for β-barrel folding on the SAM complex

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

The origin of esterase activity of Parkinson's disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA

Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex

Thermodynamic and kinetic determinants of Thermotoga maritima cold shock protein stability: A structural and dynamic analysis

High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low ΔΔCp of unfolding

Molecular Dynamics Simulation of Dimeric and Monomeric Forms of Human Prion Protein: Insight into Dynamics and Properties

1P-236 Virtual screening to separate active ligands from decoys using MD simulation and concavity shape comparing(Bioinformatics:Structural genomics, The 47th Annual Meeting of the Biophysical Society of Japan)

1P-236 MDシミュレーションとタンパク質のコンキャビティ形状比較を用いたバーチャルスクリーニング(生命情報科学-構造ゲノミクス,第47回日本生物物理学会年会)

SAHG, a comprehensive database of predicted structures of all human proteins

2P-297 Validation of statistical functions for evaluating protein structural models(The 46th Annual Meeting of the Biophysical Society of Japan)

2P-297 タンパク質立体構造予測モデルの評価関数の検討(生命情報科学・構造ゲノミクス,第46回日本生物物理学会年会)

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Dynamic and Structural Analysis of Hyperthermophilic Cold Shock Protein Stability

CASP8 Meeting Report

CASP8 Meeting Report

Urea-Induced Unfolding and Conformational Stability of 3-Isopropylmalate Dehydrogenase from the Thermophile Thermus thermophilus and Its Mesophilic Counterpart from Escherichia coli

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