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ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy

Molecular biology and evolution, 2020-11, Vol.37 (11), p.3292-3307

2020

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The effect of scan length on the reliability of resting-state fMRI connectivity estimates

NeuroImage (Orlando, Fla.), 2013-12, Vol.83, p.550-558

2013

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The performance of coalescent-based species tree estimation methods under models of missing data

BMC genomics, 2018-05, Vol.19 (Suppl 5), p.286-286, Article 286

2018

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Developmental pathways to amygdala-prefrontal function and internalizing symptoms in adolescence

Nature neuroscience, 2012-12, Vol.15 (12), p.1736-1741

2012

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Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model

Algorithms for molecular biology, 2023-12, Vol.18 (1), p.1-19, Article 19

2023

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To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods

Systematic biology, 2018-03, Vol.67 (2), p.285-303

2018

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ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets

The Journal of heredity, 2020-04, Vol.111 (2), p.147-168

2020

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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

BMC genomics, 2023-04, Vol.24 (1), p.165-165, Article 165

2023

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Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

Algorithms for molecular biology, 2019-07, Vol.14 (1), p.14-14, Article 14

2019

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Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem

Algorithms for molecular biology, 2024-01, Vol.19 (1), p.2-2, Article 2

2024

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Correction to: The performance of coalescent-based species tree estimation methods under models of missing data

BMC genomics, 2020-02, Vol.21 (1), p.133-133, Article 133

2020

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Advancing admixture graph estimation via maximum likelihood network orientation

Bioinformatics, 2021-07, Vol.37 (Supplement_1), p.i142-i150

2021

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FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models

Bioinformatics (Oxford, England), 2020-07, Vol.36 (Supplement_1), p.i57-i65

2020

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Improving quartet graph construction for scalable and accurate species tree estimation from gene trees

Genome research, 2023-07, Vol.33 (7), p.1042

2023

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Non-parametric correction of estimated gene trees using TRACTION

Algorithms for molecular biology, 2020-01, Vol.15 (1), p.1-18, Article 1

2020

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OCTAL: Optimal Completion of gene trees in polynomial time

Algorithms for molecular biology, 2018-03, Vol.13 (1), p.6-6, Article 6

2018

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Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation

Algorithms for molecular biology, 2021-06, Vol.16 (1), p.1-12, Article 12

2021

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TreeMerge: a new method for improving the scalability of species tree estimation methods

Bioinformatics, 2019-07, Vol.35 (14), p.i417-i426

2019

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TIPP2: metagenomic taxonomic profiling using phylogenetic markers

Bioinformatics (Oxford, England), 2021-07, Vol.37 (13), p.1839-1845

2021

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Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone

Systematic biology, 2022-04, Vol.71 (3), p.721-740

2022

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The influence of physiological noise correction on test-retest reliability of resting-state functional connectivity

Brain connectivity, 2014-09, Vol.4 (7), p.511-522

2014

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Inferring population structure in biobank-scale genomic data

American journal of human genetics, 2022-04, Vol.109 (4), p.727-737

2022

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The effect of resting condition on resting-state fMRI reliability and consistency: A comparison between resting with eyes open, closed, and fixated

NeuroImage (Orlando, Fla.), 2013-09, Vol.78, p.463-473

2013

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Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss

Journal of computational biology, 2021-05, Vol.28 (5), p.452-468

2021

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Genetic and behavioral differences between above and below ground Culex pipiens bioforms

Heredity, 2024-05, Vol.132 (5), p.221-231

2024

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ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy

The effect of scan length on the reliability of resting-state fMRI connectivity estimates

The performance of coalescent-based species tree estimation methods under models of missing data

Developmental pathways to amygdala-prefrontal function and internalizing symptoms in adolescence

Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model

To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods

ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets

Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem

Correction to: The performance of coalescent-based species tree estimation methods under models of missing data

Advancing admixture graph estimation via maximum likelihood network orientation

FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models

Improving quartet graph construction for scalable and accurate species tree estimation from gene trees

Non-parametric correction of estimated gene trees using TRACTION

OCTAL: Optimal Completion of gene trees in polynomial time

Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation

TreeMerge: a new method for improving the scalability of species tree estimation methods

TIPP2: metagenomic taxonomic profiling using phylogenetic markers

Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone

The influence of physiological noise correction on test-retest reliability of resting-state functional connectivity

Inferring population structure in biobank-scale genomic data

The effect of resting condition on resting-state fMRI reliability and consistency: A comparison between resting with eyes open, closed, and fixated

Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss

Genetic and behavioral differences between above and below ground Culex pipiens bioforms

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