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Methods for the integration of multi-omics data: mathematical aspects

BMC bioinformatics, 2016-01, Vol.17 Suppl 2 (29), p.15-15, Article S15

2016

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Osteogenic Differentiation of MSC through Calcium Signaling Activation: Transcriptomics and Functional Analysis

PloS one, 2016-02, Vol.11 (2), p.e0148173-e0148173

2016

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Blood microRNA changes in depressed patients during antidepressant treatment

European neuropsychopharmacology, 2013-07, Vol.23 (7), p.602-611

2013

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DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

PloS one, 2015-04, Vol.10 (4), p.e0124563-e0124563

2015

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VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

BMC bioinformatics, 2017-11, Vol.18 (1), p.520-520, Article 520

2017

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A Soft-Voting Ensemble Classifier for Detecting Patients Affected by COVID-19

Applied sciences, 2022-08, Vol.12 (15), p.7554

2022

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Network Diffusion Promotes the Integrative Analysis of Multiple Omics

Frontiers in genetics, 2020-02, Vol.11, p.106-106

2020

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Frailness and resilience of gene networks predicted by detection of co-occurring mutations via a stochastic perturbative approach

Scientific reports, 2020-02, Vol.10 (1), p.2643-2643, Article 2643

2020

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scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis

BMC bioinformatics, 2023-11, Vol.24 (1), p.1-445, Article 445

2023

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The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading

Genome Biology, 2017-10, Vol.18 (1), p.189-27, Article 189

2017

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Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia

mSphere, 2020-02, Vol.5 (1)

2020

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NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations

PloS one, 2013-09, Vol.8 (9), p.e75146-e75146

2013

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An infrastructure for precision medicine through analysis of big data

BMC bioinformatics, 2018-10, Vol.19 (Suppl 10), p.351-351, Article 351

2018

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Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations

PLoS computational biology, 2012-12, Vol.8 (12), p.e1002844-e1002844

2012

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Cyclic AMP induces reversible EPAC1 condensates that regulate histone transcription

Nature communications, 2023-09, Vol.14 (1), p.5521-5521, Article 5521

2023

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isma: an R package for the integrative analysis of mutations detected by multiple pipelines

BMC bioinformatics, 2019-02, Vol.20 (1), p.107-107, Article 107

2019

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Assessment of haptoglobin alleles in autism spectrum disorders

Scientific reports, 2020-05, Vol.10 (1), p.7758-7758, Article 7758

2020

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Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o -Xylene by RNA-Seq

Frontiers in microbiology, 2020-08, Vol.11, p.1808

2020

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Profiling the Course of Resolving vs. Persistent Inflammation in Human Monocytes: The Role of IL-1 Family Molecules

Frontiers in immunology, 2020-07, Vol.11, p.1426-1426

2020

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Network-Based Integrative Analysis of Genomics, Epigenomics and Transcriptomics in Autism Spectrum Disorders

International journal of molecular sciences, 2019-07, Vol.20 (13), p.3363

2019

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Diffusion of information throughout the host interactome reveals gene expression variations in network proximity to target proteins of hepatitis C virus

PloS one, 2014-12, Vol.9 (12), p.e113660-e113660

2014

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Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance

PloS one, 2015-10, Vol.10 (10), p.e0139467-e0139467

2015

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Framing Apache Spark in life sciences

Heliyon, 2023-02, Vol.9 (2), p.e13368-e13368, Article e13368

2023

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Author Correction: Assessment of haptoglobin alleles in autism spectrum disorders

Scientific reports, 2023-04, Vol.13 (1), p.6321-6321, Article 6321

2023

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Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7

BMC genomics, 2018-08, Vol.19 (1), p.587-17, Article 587

2018

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Methods for the integration of multi-omics data: mathematical aspects

Osteogenic Differentiation of MSC through Calcium Signaling Activation: Transcriptomics and Functional Analysis

Blood microRNA changes in depressed patients during antidepressant treatment

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

A Soft-Voting Ensemble Classifier for Detecting Patients Affected by COVID-19

Network Diffusion Promotes the Integrative Analysis of Multiple Omics

Frailness and resilience of gene networks predicted by detection of co-occurring mutations via a stochastic perturbative approach

scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading

Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations

An infrastructure for precision medicine through analysis of big data

Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations

Cyclic AMP induces reversible EPAC1 condensates that regulate histone transcription

isma: an R package for the integrative analysis of mutations detected by multiple pipelines

Assessment of haptoglobin alleles in autism spectrum disorders

Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o -Xylene by RNA-Seq

Profiling the Course of Resolving vs. Persistent Inflammation in Human Monocytes: The Role of IL-1 Family Molecules

Network-Based Integrative Analysis of Genomics, Epigenomics and Transcriptomics in Autism Spectrum Disorders

Diffusion of information throughout the host interactome reveals gene expression variations in network proximity to target proteins of hepatitis C virus

Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance

Framing Apache Spark in life sciences

Author Correction: Assessment of haptoglobin alleles in autism spectrum disorders

Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7

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