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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Nucleic acids research, 2019-01, Vol.47 (D1), p.D309-D314

2019

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Metabolic dependencies drive species co-occurrence in diverse microbial communities

Proceedings of the National Academy of Sciences - PNAS, 2015-05, Vol.112 (20), p.6449-6454

2015

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Microbial abundance, activity and population genomic profiling with mOTUs2

Nature communications, 2019-03, Vol.10 (1), p.1014-1014, Article 1014

2019

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Assessment of metagenomic assembly using simulated next generation sequencing data

PloS one, 2012-02, Vol.7 (2), p.e31386-e31386

2012

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A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

Proceedings of the National Academy of Sciences - PNAS, 2019-10, Vol.116 (41), p.20574-20583

2019

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Accurate and universal delineation of prokaryotic species

Nature methods, 2013-09, Vol.10 (9), p.881-884

2013

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GUNC: detection of chimerism and contamination in prokaryotic genomes

Genome Biology, 2021-06, Vol.22 (1), p.178-178, Article 178

2021

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Inter-individual differences in the gene content of human gut bacterial species

Genome Biology, 2015-04, Vol.16 (1), p.82, Article 82

2015

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Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review

PLoS medicine, 2023-06, Vol.20 (6), p.e1004235-e1004235

2023

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Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean

Proceedings of the National Academy of Sciences - PNAS, 2016-12, Vol.113 (50), p.14237-14242

2016

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Genomic variation landscape of the human gut microbiome

Nature (London), 2013-01, Vol.493 (7430), p.45-50

2013

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Potential of fecal microbiota for early‐stage detection of colorectal cancer

Molecular systems biology, 2014-11, Vol.10 (11), p.766-n/a

2014

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MOCAT: a metagenomics assembly and gene prediction toolkit

PloS one, 2012-10, Vol.7 (10), p.e47656-e47656

2012

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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Nucleic acids research, 2016-01, Vol.44 (D1), p.D286-D293

2016

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Country-specific antibiotic use practices impact the human gut resistome

Genome research, 2013-07, Vol.23 (7), p.1163-1169

2013

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Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

Proceedings of the National Academy of Sciences - PNAS, 2017-10, Vol.114 (43), p.11446-11451

2017

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eggNOG 6.0: enabling comparative genomics across 12 535 organisms

Nucleic acids research, 2023-01, Vol.51 (D1), p.D389-D394

2023

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Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

The ISME Journal, 2020-05, Vol.14 (5), p.1304-1315

2020

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proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

Nucleic acids research, 2017-01, Vol.45 (D1), p.D529-D534

2017

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Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity

The ISME Journal, 2020-05, Vol.14 (5), p.1247-1259

2020

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Deciphering a global network of functionally associated post‐translational modifications

Molecular systems biology, 2012-07, Vol.8 (1), p.599-n/a

2012

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Role for urea in nitrification by polar marine Archaea

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (44), p.17989-17994

2012

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Towards the biogeography of prokaryotic genes

Nature (London), 2022-01, Vol.601 (7892), p.252-256

2022

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Bacteriophage Distributions and Temporal Variability in the Ocean's Interior

mBio, 2017-11, Vol.8 (6)

2017

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proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

Nucleic acids research, 2020-01, Vol.48 (D1), p.D621

2020

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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Metabolic dependencies drive species co-occurrence in diverse microbial communities

Microbial abundance, activity and population genomic profiling with mOTUs2

Assessment of metagenomic assembly using simulated next generation sequencing data

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

Accurate and universal delineation of prokaryotic species

GUNC: detection of chimerism and contamination in prokaryotic genomes

Inter-individual differences in the gene content of human gut bacterial species

Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean

Genomic variation landscape of the human gut microbiome

Potential of fecal microbiota for early‐stage detection of colorectal cancer

MOCAT: a metagenomics assembly and gene prediction toolkit

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Country-specific antibiotic use practices impact the human gut resistome

Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

eggNOG 6.0: enabling comparative genomics across 12 535 organisms

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity

Deciphering a global network of functionally associated post‐translational modifications

Role for urea in nitrification by polar marine Archaea

Towards the biogeography of prokaryotic genes

Bacteriophage Distributions and Temporal Variability in the Ocean's Interior

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

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