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pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

BMC bioinformatics, 2010-10, Vol.11 (1), p.538-538, Article 538

2010

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Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

PLoS computational biology, 2016-01, Vol.12 (1), p.e1004409-e1004409

2016

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PhyloSift: phylogenetic analysis of genomes and metagenomes

PeerJ (San Francisco, CA), 2014-01, Vol.2, p.e243-e243

2014

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Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data

PLoS computational biology, 2019-07, Vol.15 (7), p.e1007133-e1007133

2019

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Inference of B cell clonal families using heavy/light chain pairing information

PLoS computational biology, 2022-11, Vol.18 (11), p.e1010723-e1010723

2022

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Likelihood-Based Inference of B Cell Clonal Families

PLoS computational biology, 2016-10, Vol.12 (10), p.e1005086-e1005086

2016

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Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women

PLoS pathogens, 2020-02, Vol.16 (2), p.e1008286

2020

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Minimum 10-year Follow-up of Anatomic Total Shoulder Arthroplasty and Ream-and-Run Arthroplasty for Primary Glenohumeral Osteoarthritis

Journal of shoulder and elbow surgery, 2024-06, Vol.33 (6), p.1276-1284

2024

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Rotator Cuff Repair: Published Evidence on Factors Associated With Repair Integrity and Clinical Outcome

The American journal of sports medicine, 2015-02, Vol.43 (2), p.491-500

2015

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Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison

PloS one, 2013-03, Vol.8 (3), p.e56859-e56859

2013

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Using B cell receptor lineage structures to predict affinity

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008391-e1008391

2020

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Propionibacterium persists in the skin despite standard surgical preparation

Journal of bone and joint surgery. American volume, 2014-09, Vol.96 (17), p.1447-1450

2014

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Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria

PloS one, 2012-06, Vol.7 (6), p.e37818-e37818

2012

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Quantifying MCMC Exploration of Phylogenetic Tree Space

Systematic biology, 2015-05, Vol.64 (3), p.472-491

2015

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Letter to the Editor: Clinical Faceoff: How Will Recent Price Transparency Policies Impact Orthopaedic Surgery and its Patients?

Clinical orthopaedics and related research, 2021-12, Vol.479 (12), p.2755-2755

Matsen, 3rd, Frederick A

2021

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What is the optimal management of a loose glenoid component after anatomic total shoulder arthroplasty: a systematic review

Journal of shoulder and elbow surgery, 2023-03, Vol.32 (3), p.653-661

2023

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Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity

eLife, 2018-08, Vol.7

2018

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Charles Rockwood was the Abe Lincoln of Orthopaedics

Journal of shoulder and elbow surgery, 2022-06, Vol.31 (6), p.1334-1334

Matsen, Frederick A.

2022

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The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx

Cell host & microbe, 2012-02, Vol.11 (2), p.194-204

2012

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Origin of propionibacterium in surgical wounds and evidence-based approach for culturing propionibacterium from surgical sites

Journal of bone and joint surgery. American volume, 2013-12, Vol.95 (23), p.e1811

2013

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Using viral sequence diversity to estimate time of HIV infection in infants

PLoS pathogens, 2023-12, Vol.19 (12), p.e1011861-e1011861

2023

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Which Components of the Simple Shoulder Test Show Improvement After Scapulothoracic Fusion for Recalcitrant Scapular Winging? Clinical Results at a Minimum of 5 Years of Follow-up

Clinical orthopaedics and related research, 2023-12, Vol.481 (12), p.2392-2402

2023

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A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis

PLoS computational biology, 2020-08, Vol.16 (8), p.e1008030

2020

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Does adding hydrogen peroxide to chlorhexidine gluconate increase the effectiveness of skin preparation in reducing cutaneous Cutibacterium levels? A randomized controlled trial

Journal of shoulder and elbow surgery, 2024-09, Vol.33 (9), p.1905-1908

2024

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Optimization of Periprosthetic Culture for Diagnosis of Propionibacterium acnes Prosthetic Joint Infection

Journal of Clinical Microbiology, 2011-07, Vol.49 (7), p.2490-2495

2011

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pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

PhyloSift: phylogenetic analysis of genomes and metagenomes

Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data

Inference of B cell clonal families using heavy/light chain pairing information

Likelihood-Based Inference of B Cell Clonal Families

Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women

Minimum 10-year Follow-up of Anatomic Total Shoulder Arthroplasty and Ream-and-Run Arthroplasty for Primary Glenohumeral Osteoarthritis

Rotator Cuff Repair: Published Evidence on Factors Associated With Repair Integrity and Clinical Outcome

Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison

Using B cell receptor lineage structures to predict affinity

Propionibacterium persists in the skin despite standard surgical preparation

Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria

Quantifying MCMC Exploration of Phylogenetic Tree Space

Letter to the Editor: Clinical Faceoff: How Will Recent Price Transparency Policies Impact Orthopaedic Surgery and its Patients?

What is the optimal management of a loose glenoid component after anatomic total shoulder arthroplasty: a systematic review

Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity

Charles Rockwood was the Abe Lincoln of Orthopaedics

The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx

Origin of propionibacterium in surgical wounds and evidence-based approach for culturing propionibacterium from surgical sites

Using viral sequence diversity to estimate time of HIV infection in infants

Which Components of the Simple Shoulder Test Show Improvement After Scapulothoracic Fusion for Recalcitrant Scapular Winging? Clinical Results at a Minimum of 5 Years of Follow-up

A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis

Does adding hydrogen peroxide to chlorhexidine gluconate increase the effectiveness of skin preparation in reducing cutaneous Cutibacterium levels? A randomized controlled trial

Optimization of Periprosthetic Culture for Diagnosis of Propionibacterium acnes Prosthetic Joint Infection

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