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The BioPAX community standard for pathway data sharing

Nature biotechnology, 2010-09, Vol.28 (9), p.935-942

2010

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Automatic reconstruction of a bacterial regulatory network using Natural Language Processing

BMC bioinformatics, 2007-08, Vol.8 (1), p.293-293, Article 293

2007

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The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella

PLoS pathogens, 2017-07, Vol.13 (7), p.e1006497-e1006497

2017

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Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C‐terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals

Molecular microbiology, 2004-09, Vol.53 (5), p.1501-1513

2004

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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Nucleic acids research, 2006-01, Vol.34 (Database issue), p.D394-D397

2006

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Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters

Frontiers in microbiology, 2019-04, Vol.10, p.910-910

2019

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In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes

Journal of Bacteriology, 2014-01, Vol.196 (2), p.325-336

2014

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Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children’s Hospital in México City in an eight-years survey

PeerJ (San Francisco, CA), 2019-11, Vol.7, p.e8068-e8068, Article e8068

2019

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D98-D105

2011

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Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability

Current genomics, 2013-09, Vol.14 (6), p.378-387

2013

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Role of core lipopolysaccharide biosynthetic genes in the infection and adsorption of broad-host-range bacteriophages of Rhizobium etli

Microbiological research, 2024-08, Vol.285, p.127766-127766, Article 127766

2024

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Editorial: Women in bioinformatics

Frontiers in bioinformatics, 2024-10, Vol.4, p.1499514

2024

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Nucleic acids research, 2008-01, Vol.36 (Database issue), p.D120-D124

2008

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Bioinformatics Resources for the Study of Gene Regulation in Bacteria

Journal of bacteriology, 2009-01, Vol.191 (1), p.23-31

2009

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Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally

Frontiers in microbiology, 2020-09, Vol.11, p.513070-513070

2020

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In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD

Scientific reports, 2016-11, Vol.6 (1), p.37858-37858, Article 37858

2016

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Using RegulonDB, the Escherichia coli K‐12 Gene Regulatory Transcriptional Network Database

Current Protocols in Bioinformatics, 2018-03, Vol.61 (1), p.1.32.1-1.32.30

2018

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Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris)

Genome announcements (Washington, DC), 2017-07, Vol.5 (30)

2017

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Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris)

Genome announcements (Washington, DC), 2017-03, Vol.5 (11)

2017

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The ompB operon partially determines differential expression of OmpC in Salmonella typhi and Escherichia coli

Journal of bacteriology, 1999-01, Vol.181 (2), p.556-562

1999

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Novel Porin genes and modes of Porin regulation in Salmonella typhi

Medical journal of Indonesia, 1998, p.25

1998

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Extracting regulatory networks of Escherichia coli from RegulonDB

Methods in molecular biology (Clifton, N.J.), 2012, Vol.804, p.179

2012

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Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

Nature biotechnology, 2012-04, Vol.30 (4), p.365-365

2012

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The BioPAX community standard for pathway data sharing

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella

Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C‐terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters

In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children’s Hospital in México City in an eight-years survey

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability

Role of core lipopolysaccharide biosynthetic genes in the infection and adsorption of broad-host-range bacteriophages of Rhizobium etli

Editorial: Women in bioinformatics

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Bioinformatics Resources for the Study of Gene Regulation in Bacteria

Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally

In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD

Using RegulonDB, the Escherichia coli K‐12 Gene Regulatory Transcriptional Network Database

Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris)

Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris)

The ompB operon partially determines differential expression of OmpC in Salmonella typhi and Escherichia coli

Novel Porin genes and modes of Porin regulation in Salmonella typhi

Extracting regulatory networks of Escherichia coli from RegulonDB

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

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