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Protein-protein interaction network module changes associated with the vertebrate fin-to-limb transition

Scientific reports, 2023-12, Vol.13 (1), p.22594-22594, Article 22594

2023

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Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

BMC bioinformatics, 2020-10, Vol.21 (1), p.1-442, Article 442

2020

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Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae)

Developmental dynamics, 2003-11, Vol.228 (3), p.337-357

2003

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rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

Methods in ecology and evolution, 2023-10, Vol.14 (10), p.2531-2540

2023

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Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices

PloS one, 2016-05, Vol.11 (5), p.e0155680-e0155680

2016

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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Journal of biomedical semantics, 2014-05, Vol.5 (1), p.21-21

2014

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Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

PloS one, 2010-05, Vol.5 (5), p.e10708-e10708

2010

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A unified anatomy ontology of the vertebrate skeletal system

PloS one, 2012-12, Vol.7 (12), p.e51070-e51070

2012

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The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Systematic biology, 2010-07, Vol.59 (4), p.369-383

2010

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Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

PloS one, 2016-02, Vol.11 (2), p.e0149102-e0149102

2016

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Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

Systematic biology, 2015-11, Vol.64 (6), p.936-952

2015

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Emerging semantics to link phenotype and environment

PeerJ (San Francisco, CA), 2015-12, Vol.3, p.e1470-e1470, Article e1470

2015

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A Logical Model of Homology for Comparative Biology

Systematic biology, 2020-03, Vol.69 (2), p.345

2020

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Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes

Systematic biology, 2018-07, Vol.67 (4), p.559

2018

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Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Molecular biology and evolution, 2016-01, Vol.33 (1), p.13-24

2016

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Phenotype ontologies: the bridge between genomics and evolution

Trends in ecology & evolution (Amsterdam), 2007-07, Vol.22 (7), p.345-350

2007

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The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach

Journal of Ecology and Environment, 2023, 47(4), , pp.219-227

2023

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Development of the paired fins in the paddlefish, Polyodon spathula

Journal of morphology (1931), 2004-09, Vol.261 (3), p.334-344

2004

Volltextzugriff (PDF)

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Database : the journal of biological databases and curation, 2018-01, Vol.2018

2018

Volltextzugriff (PDF)

Gene expression patterns underlying proximal–distal skeletal segmentation in late‐stage zebrafish, Danio rerio

Developmental dynamics, 2007-11, Vol.236 (11), p.3111-3128

2007

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Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Journal of biomedical semantics, 2014-08, Vol.5 (1), p.34-34

2014

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A Dual Embryonic Origin for Vertebrate Mechanoreceptors

Science (American Association for the Advancement of Science), 1994-04, Vol.264 (5157), p.426-430

1994

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The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Journal of biomedical semantics, 2013-11, Vol.4 (1), p.34-34, Article 34

2013

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Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

Gene Expression Patterns, 2004-12, Vol.5 (2), p.291-296

2004

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Segmentation and fusion on the midline: Basibranchial homologies in cypriniform fishes

Journal of morphology (1931), 2012-07, Vol.273 (7), p.725-736

2012

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Protein-protein interaction network module changes associated with the vertebrate fin-to-limb transition

Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae)

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

A unified anatomy ontology of the vertebrate skeletal system

The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

Emerging semantics to link phenotype and environment

A Logical Model of Homology for Comparative Biology

Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Phenotype ontologies: the bridge between genomics and evolution

The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach

Development of the paired fins in the paddlefish, Polyodon spathula

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Gene expression patterns underlying proximal–distal skeletal segmentation in late‐stage zebrafish, Danio rerio

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

A Dual Embryonic Origin for Vertebrate Mechanoreceptors

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

Segmentation and fusion on the midline: Basibranchial homologies in cypriniform fishes

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