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FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome

Scientific reports, 2020-01, Vol.10 (1), p.287-287, Article 287

2020

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Heterogeneity–disease relationship in the human microbiome-associated diseases

FEMS microbiology ecology, 2020-07, Vol.96 (7), p.1

Ma, Zhanshan (Sam)

2020

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Influences of Helicobacter pylori infection on diversity, heterogeneity, and composition of human gastric microbiomes across stages of gastric cancer development

Helicobacter (Cambridge, Mass.), 2022-08, Vol.27 (4), p.e12899-n/a

2022

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Metagenome comparison (MC): A new framework for detecting unique/enriched OMUs (operational metagenomic units) derived from whole-genome sequencing reads

Computers in biology and medicine, 2024-09, Vol.180, p.108852, Article 108852

Ma, Zhanshan (Sam)

2024

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Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes

BMC bioinformatics, 2024-03, Vol.25 (1), p.137-137, Article 137

Ma, Zhanshan Sam

2024

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A unified survival-analysis approach to insect population development and survival times

Scientific reports, 2021-04, Vol.11 (1), p.8223-8223, Article 8223

Ma, Zhanshan (Sam)

2021

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How and Why Men and Women Differ in Their Microbiomes: Medical Ecology and Network Analyses of the Microgenderome

Advanced science, 2019-12, Vol.6 (23), p.1902054-n/a

2019

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A theoretic approach to the mode of gut microbiome translocation in SIV-infected Asian macaques

FEMS microbiology ecology, 2020-08, Vol.96 (8), p.1

2020

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Diversity-disease relationships and shared species analyses for human microbiome-associated diseases

The ISME Journal, 2019-08, Vol.13 (8), p.1911-1919

2019

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Testing the Anna Karenina Principle in Human Microbiome-Associated Diseases

iScience, 2020-04, Vol.23 (4), p.101007-101007, Article 101007

Ma, Zhanshan (Sam)

2020

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Virome comparison (VC): A novel approach to comparing viromes based on virus species specificity and virome specificity diversity

Journal of medical virology, 2023-04, Vol.95 (4), p.e28682-n/a

Ma, Zhanshan (Sam)

2023

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Measuring metagenome diversity and similarity with Hill numbers

Molecular ecology resources, 2018-11, Vol.18 (6), p.1339-1355

2018

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Microbiome–host-phylogeny relationships in animal gastrointestinal tract microbiomes

FEMS microbiology ecology, 2022-03, Vol.98 (2)

2022

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DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses

Ecology and evolution, 2018-10, Vol.8 (20), p.10023-10038

Ma, Zhanshan (Sam)

2018

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Comparative power law analysis for the spatial heterogeneity scaling of the hot‐spring microbiomes

Molecular ecology, 2019-06, Vol.28 (11), p.2932-2943

2019

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Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

The ISME Journal, 2014-04, Vol.8 (4), p.881-893

2014

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Microbiome Transmission During Sexual Intercourse Appears Stochastic and Supports the Red Queen Hypothesis

Frontiers in microbiology, 2022-03, Vol.12, p.789983-789983

Ma, Zhanshan Sam

2022

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The P/N (Positive-to-Negative Links) Ratio in Complex Networks—A Promising In Silico Biomarker for Detecting Changes Occurring in the Human Microbiome

Microbial ecology, 2018-05, Vol.75 (4), p.1063-1074

Ma, Zhanshan (Sam)

2018

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Sketching the Human Microbiome Biogeography with DAR (Diversity-Area Relationship) Profiles

Microbial ecology, 2019-04, Vol.77 (3), p.821-838

Ma, Zhanshan (Sam)

2019

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Temporal dynamics of the human vaginal microbiota

Science translational medicine, 2012-05, Vol.4 (132), p.132ra52

2012

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Erratum for Ma, "A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes"

mSystems, 2024-08, Vol.9 (8), p.e0068724

Ma, Zhanshan Sam

2024

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Shared Species Analysis, Augmented by Stochasticity Analysis, Is More Effective Than Diversity Analysis in Detecting Variations in the Gut Microbiomes

Frontiers in microbiology, 2022-07, Vol.13, p.914429-914429

Ma, Zhanshan (Sam)

2022

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Niche‐neutral theoretic approach to mechanisms underlying the biodiversity and biogeography of human microbiomes

Evolutionary applications, 2021-02, Vol.14 (2), p.322-334

Ma, Zhanshan (Sam)

2021

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Spatial heterogeneity analysis of the human virome with Taylor’s power law

Computational and structural biotechnology journal, 2021-01, Vol.19, p.2921-2927

Ma, Zhanshan (Sam)

2021

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Soil bacterial communities of different natural forest types in Northeast China

Plant and soil, 2014-10, Vol.383 (1-2), p.203-216

2014

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FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome

Heterogeneity–disease relationship in the human microbiome-associated diseases

Influences of Helicobacter pylori infection on diversity, heterogeneity, and composition of human gastric microbiomes across stages of gastric cancer development

Metagenome comparison (MC): A new framework for detecting unique/enriched OMUs (operational metagenomic units) derived from whole-genome sequencing reads

Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes

A unified survival-analysis approach to insect population development and survival times

How and Why Men and Women Differ in Their Microbiomes: Medical Ecology and Network Analyses of the Microgenderome

A theoretic approach to the mode of gut microbiome translocation in SIV-infected Asian macaques

Diversity-disease relationships and shared species analyses for human microbiome-associated diseases

Testing the Anna Karenina Principle in Human Microbiome-Associated Diseases

Virome comparison (VC): A novel approach to comparing viromes based on virus species specificity and virome specificity diversity

Measuring metagenome diversity and similarity with Hill numbers

Microbiome–host-phylogeny relationships in animal gastrointestinal tract microbiomes

DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses

Comparative power law analysis for the spatial heterogeneity scaling of the hot‐spring microbiomes

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

Microbiome Transmission During Sexual Intercourse Appears Stochastic and Supports the Red Queen Hypothesis

The P/N (Positive-to-Negative Links) Ratio in Complex Networks—A Promising In Silico Biomarker for Detecting Changes Occurring in the Human Microbiome

Sketching the Human Microbiome Biogeography with DAR (Diversity-Area Relationship) Profiles

Temporal dynamics of the human vaginal microbiota

Erratum for Ma, "A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes"

Shared Species Analysis, Augmented by Stochasticity Analysis, Is More Effective Than Diversity Analysis in Detecting Variations in the Gut Microbiomes

Niche‐neutral theoretic approach to mechanisms underlying the biodiversity and biogeography of human microbiomes

Spatial heterogeneity analysis of the human virome with Taylor’s power law

Soil bacterial communities of different natural forest types in Northeast China

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