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NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

BMC bioinformatics, 2009-09, Vol.10 (1), p.296-296, Article 296

2009

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Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system

PloS one, 2010-04, Vol.5 (4), p.e9862-e9862

2010

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Reliable B cell epitope predictions: impacts of method development and improved benchmarking

PLoS computational biology, 2012-12, Vol.8 (12), p.e1002829-e1002829

2012

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Rapid and precise alignment of raw reads against redundant databases with KMA

BMC bioinformatics, 2018-08, Vol.19 (1), p.307-307, Article 307

2018

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Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

BMC bioinformatics, 2007-07, Vol.8 (1), p.238-238, Article 238

2007

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AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides

Scientific reports, 2020-12, Vol.10 (1), p.21471-21471, Article 21471

2020

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Solving the problem of comparing whole bacterial genomes across different sequencing platforms

PloS one, 2014-08, Vol.9 (8), p.e104984-e104984

2014

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NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

Immunogenetics (New York), 2012-03, Vol.64 (3), p.177-186

2012

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Peptide binding predictions for HLA DR, DP and DQ molecules

BMC bioinformatics, 2010-11, Vol.11 (1), p.568-568, Article 568

2010

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Genetic variation for tolerance to the downy mildew pathogen Peronospora variabilis in genetic resources of quinoa (Chenopodium quinoa)

BMC plant biology, 2021-01, Vol.21 (1), p.41-41, Article 41

2021

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Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1501-1510

2014

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PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data

PloS one, 2013-10, Vol.8 (10), p.e77302-e77302

2013

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NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

Immunogenetics (New York), 2013-10, Vol.65 (10), p.711-724

2013

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W509

2008

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Journal of Clinical Microbiology, 2012-04, Vol.50 (4), p.1355-1361

2012

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Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

Journal of Clinical Microbiology, 2014-01, Vol.52 (1), p.139-146

2014

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The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

Bioinformatics, 2009-05, Vol.25 (10), p.1293-1299

2009

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Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica

PloS one, 2014-02, Vol.9 (2), p.e87991-e87991

2014

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The enhancing effect of intercropping sugar beet with chicory on the deep root growth and nutrient uptake

Agriculture, ecosystems & environment, 2023-05, Vol.347, p.108360, Article 108360

2023

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Potyviral resistance derived from cultivars of Phaseolus vulgaris carrying bc-3 is associated with the homozygotic presence of a mutated eIF4E allele

Molecular plant pathology, 2010-03, Vol.11 (2), p.255-263

2010

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Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers

Bioinformatics, 2008-06, Vol.24 (11), p.1397-1398

2008

Volltextzugriff (PDF)

Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures

Protein science, 2006-11, Vol.15 (11), p.2558-2567

2006

Volltextzugriff (PDF)

Insights from 20 years of bacterial genome sequencing

Functional & integrative genomics, 2015-03, Vol.15 (2), p.141-161

2015

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Benchmarking of methods for genomic taxonomy

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1529-1539

2014

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MHC Class II epitope predictive algorithms

Immunology, 2010-07, Vol.130 (3), p.319-328

2010

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NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system

Reliable B cell epitope predictions: impacts of method development and improved benchmarking

Rapid and precise alignment of raw reads against redundant databases with KMA

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides

Solving the problem of comparing whole bacterial genomes across different sequencing platforms

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

Peptide binding predictions for HLA DR, DP and DQ molecules

Genetic variation for tolerance to the downy mildew pathogen Peronospora variabilis in genetic resources of quinoa (Chenopodium quinoa)

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica

The enhancing effect of intercropping sugar beet with chicory on the deep root growth and nutrient uptake

Potyviral resistance derived from cultivars of Phaseolus vulgaris carrying bc-3 is associated with the homozygotic presence of a mutated eIF4E allele

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers

Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures

Insights from 20 years of bacterial genome sequencing

Benchmarking of methods for genomic taxonomy

MHC Class II epitope predictive algorithms

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