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High-Throughput Genomic Data in Systematics and Phylogenetics

Annual review of ecology, evolution, and systematics, 2013-01, Vol.44 (1), p.99-121

2013

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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

Systematic biology, 2012-10, Vol.61 (5), p.727-744

2012

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A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

Nature (London), 2015-10, Vol.526 (7574), p.569-573

2015

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Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

Nature communications, 2018-08, Vol.9 (1), p.3159-12, Article 3159

2018

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Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life

BMC evolutionary biology, 2016-10, Vol.16 (1), p.212, Article 212

2016

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A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

Proceedings of the Royal Society. B, Biological sciences, 2019-04, Vol.286 (1901), p.20190079-20190079

2019

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The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

BMC genomics, 2012-07, Vol.13 (1), p.312-312

2012

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Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes

Molecular ecology, 2019-03, Vol.28 (6), p.1375-1393

2019

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Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics

Systematic biology, 2018-01, Vol.67 (1), p.94-112

2018

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Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life

Systematic biology, 2021-01, Vol.70 (1), p.49-66

2021

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Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

Molecular phylogenetics and evolution, 2016-01, Vol.94 (Pt A), p.447-462

2016

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Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization

Molecular phylogenetics and evolution, 2021-03, Vol.156, p.107023-107023, Article 107023

2021

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Phylogenomics clarifies repeated evolutionary origins of inbreeding and fungus farming in bark beetles (Curculionidae, Scolytinae)

Molecular phylogenetics and evolution, 2018-10, Vol.127, p.229-238

2018

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The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

Systematic biology, 2009-02, Vol.58 (1), p.130-145

2009

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Phylogeny and classification of Odonata using targeted genomics

Molecular phylogenetics and evolution, 2021-07, Vol.160, p.107115-107115, Article 107115

2021

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Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

PLoS genetics, 2020-05, Vol.16 (5), p.e1008769

2020

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Tracking temporal shifts in area, biomes, and pollinators in the radiation of Salvia (sages) across continents: leveraging anchored hybrid enrichment and targeted sequence data

American journal of botany, 2019-04, Vol.106 (4), p.573-597

2019

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Evolution of lacewings and allied orders using anchored phylogenomics ( N europtera, M egaloptera, R aphidioptera)

Systematic entomology, 2018-04, Vol.43 (2), p.330-354

2018

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A Likelihood Framework for Estimating Phylogeographic History on a Continuous Landscape

Systematic biology, 2008-08, Vol.57 (4), p.544-561

2008

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When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

Systematic biology, 2010-03, Vol.59 (2), p.145-161

2010

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The Importance of Data Partitioning and the Utility of Bayes Factors in Bayesian Phylogenetics

Systematic biology, 2007-08, Vol.56 (4), p.643-655

2007

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A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)

Molecular phylogenetics and evolution, 2017-12, Vol.117, p.124-134

2017

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Owlflies are derived antlions: anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera)

Systematic entomology, 2019-04, Vol.44 (2), p.418-450

2019

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Lack of host phylogenetic structure in the gut bacterial communities of New Zealand cicadas and their interspecific hybrids

Scientific reports, 2022-11, Vol.12 (1), p.20559-20559, Article 20559

2022

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The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

Cladistics, 2016-04, Vol.32 (2), p.113-140

2016

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High-Throughput Genomic Data in Systematics and Phylogenetics

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life

A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes

Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics

Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization

Phylogenomics clarifies repeated evolutionary origins of inbreeding and fungus farming in bark beetles (Curculionidae, Scolytinae)

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

Phylogeny and classification of Odonata using targeted genomics

Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Tracking temporal shifts in area, biomes, and pollinators in the radiation of Salvia (sages) across continents: leveraging anchored hybrid enrichment and targeted sequence data

Evolution of lacewings and allied orders using anchored phylogenomics ( N europtera, M egaloptera, R aphidioptera)

A Likelihood Framework for Estimating Phylogeographic History on a Continuous Landscape

When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

The Importance of Data Partitioning and the Utility of Bayes Factors in Bayesian Phylogenetics

A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)

Owlflies are derived antlions: anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera)

Lack of host phylogenetic structure in the gut bacterial communities of New Zealand cicadas and their interspecific hybrids

The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

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