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Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011197-e1011197

2023

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Predicting Pharmacodynamic Drug-Drug Interactions through Signaling Propagation Interference on Protein-Protein Interaction Networks

PloS one, 2015-10, Vol.10 (10), p.e0140816-e0140816

2015

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Combining empirical knowledge, in silico molecular docking and ADMET profiling to identify therapeutic phytochemicals from Brucea antidysentrica for acute myeloid leukemia

PloS one, 2022-07, Vol.17 (7), p.e0270050-e0270050

2022

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Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence

Nutrients, 2018-08, Vol.10 (8), p.1042

2018

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Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment

Cancer cell, 2016-12, Vol.30 (6), p.953-967

2016

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Literature mining for context-specific molecular relations using multimodal representations (COMMODAR)

BMC bioinformatics, 2020-10, Vol.21 (Suppl 5), p.1-250, Article 250

2020

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Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

The Plant cell, 2009-02, Vol.21 (2), p.403-419

2009

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Topological motifs populate complex networks through grouped attachment

Scientific reports, 2018-08, Vol.8 (1), p.12670-11, Article 12670

2018

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Computational Discovery of Cancer Immunotherapy Targets by Intercellular CRISPR Screens

Frontiers in immunology, 2022-05, Vol.13, p.884561-884561

2022

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Inferring pathway activity toward precise disease classification

PLoS computational biology, 2008-11, Vol.4 (11), p.e1000217-e1000217

2008

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Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

Scientific reports, 2020-09, Vol.10 (1), p.14977-14977, Article 14977

2020

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A feature-based approach to modeling protein-protein interaction hot spots

Nucleic acids research, 2009-05, Vol.37 (8), p.2672

2009

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Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

Proceedings of the National Academy of Sciences - PNAS, 2009-05, Vol.106 (18), p.7660-7665

2009

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In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models

Scientific reports, 2022-12, Vol.12 (1), p.22221-19, Article 22221

2022

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Identification of common coexpression modules based on quantitative network comparison

BMC bioinformatics, 2018-06, Vol.19 (Suppl 8), p.213-213, Article 213

2018

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A systematic approach to identify therapeutic effects of natural products based on human metabolite information

BMC bioinformatics, 2018-06, Vol.19 (Suppl 8), p.205-205, Article 205

2018

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Designing combinational herbal drugs based on target space analysis

BMC complementary medicine and therapies, 2024-05, Vol.24 (Suppl 1), p.179-179, Article 179

2024

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Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach

IEEE/ACM transactions on computational biology and bioinformatics, 2018-03, Vol.15 (2), p.432-440

2018

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Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification

Bioinformatics, 2009-12, Vol.25 (23), p.3151-3157

2009

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Vascular RhoJ Is an Effective and Selective Target for Tumor Angiogenesis and Vascular Disruption

Cancer cell, 2014-01, Vol.25 (1), p.102-117

2014

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Optogenetic mimicry of the transient activation of dopamine neurons by natural reward is sufficient for operant reinforcement

PloS one, 2012-04, Vol.7 (4), p.e33612-e33612

2012

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An interactive retrieval system for clinical trial studies with context-dependent protocol elements

PloS one, 2020-09, Vol.15 (9), p.e0238290-e0238290

2020

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Transcription of human endogenous retroviruses in human brain by RNA-seq analysis

PloS one, 2019, Vol.14 (1), p.e0207353-e0207353

2019

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CODA-ML: context-specific biological knowledge representation for systemic physiology analysis

BMC bioinformatics, 2019-05, Vol.20 (Suppl 10), p.248-248, Article 248

2019

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Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes

Scientific data, 2022-05, Vol.9 (1), p.235-235, Article 235

2022

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Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions

Predicting Pharmacodynamic Drug-Drug Interactions through Signaling Propagation Interference on Protein-Protein Interaction Networks

Combining empirical knowledge, in silico molecular docking and ADMET profiling to identify therapeutic phytochemicals from Brucea antidysentrica for acute myeloid leukemia

Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence

Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment

Literature mining for context-specific molecular relations using multimodal representations (COMMODAR)

Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

Topological motifs populate complex networks through grouped attachment

Computational Discovery of Cancer Immunotherapy Targets by Intercellular CRISPR Screens

Inferring pathway activity toward precise disease classification

Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

A feature-based approach to modeling protein-protein interaction hot spots

Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models

Identification of common coexpression modules based on quantitative network comparison

A systematic approach to identify therapeutic effects of natural products based on human metabolite information

Designing combinational herbal drugs based on target space analysis

Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach

Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification

Vascular RhoJ Is an Effective and Selective Target for Tumor Angiogenesis and Vascular Disruption

Optogenetic mimicry of the transient activation of dopamine neurons by natural reward is sufficient for operant reinforcement

An interactive retrieval system for clinical trial studies with context-dependent protocol elements

Transcription of human endogenous retroviruses in human brain by RNA-seq analysis

CODA-ML: context-specific biological knowledge representation for systemic physiology analysis

Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes

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