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Towards a more general understanding of the algorithmic utility of recurrent connections

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010227

2022

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The Crumbs Complex Couples Cell Density Sensing to Hippo-Dependent Control of the TGF-β-SMAD Pathway

Developmental cell, 2010-12, Vol.19 (6), p.831-844

2010

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DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

Nature methods, 2015-03, Vol.12 (3), p.258-264

2015

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A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways

Cell, 2014-07, Vol.158 (2), p.434-448

2014

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Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Nature communications, 2017-08, Vol.8 (1), p.291-12, Article 291

2017

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SAINT: probabilistic scoring of affinity purification-mass spectrometry data

Nature methods, 2011-01, Vol.8 (1), p.70-73

2011

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A PP2A Phosphatase High Density Interaction Network Identifies a Novel Striatin-interacting Phosphatase and Kinase Complex Linked to the Cerebral Cavernous Malformation 3 (CCM3) Protein

Molecular & cellular proteomics, 2009-01, Vol.8 (1), p.157-171

2009

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Global Protein Kinase and Phosphatase Interaction Network in Yeast

Science (American Association for the Advancement of Science), 2010-05, Vol.328 (5981), p.1043-1046

2010

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Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin-Expressing Cells

Science (American Association for the Advancement of Science), 2009-12, Vol.326 (5959), p.1502-1509

2009

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Variability in Streptavidin–Sepharose Matrix Quality Can Significantly Affect Proximity-Dependent Biotinylation (BioID) Data

Journal of proteome research, 2020-08, Vol.19 (8), p.3554-3561

2020

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ProHits: integrated software for mass spectrometry-based interaction proteomics

Nature biotechnology, 2010-10, Vol.28 (10), p.1015-1017

2010

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Mortality is predicted by Comorbidity Polypharmacy score but not Charlson Comorbidity Index in geriatric trauma patients

The American journal of surgery, 2018-07, Vol.216 (1), p.42-45

2018

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BDNF signaling in the VTA links the drug-dependent state to drug withdrawal aversions

The Journal of neuroscience, 2014-06, Vol.34 (23), p.7899-7909

2014

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Glucagon-like peptide-1 receptor agonists increase pancreatic mass by induction of protein synthesis

Diabetes (New York, N.Y.), 2015-03, Vol.64 (3), p.1046-1056

2015

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Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping

Molecular & cellular proteomics, 2017-06, Vol.16 (6), p.1162-1171

2017

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Label-free quantitative proteomics trends for protein–protein interactions

Journal of proteomics, 2013-04, Vol.81, p.91-101

2013

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The macrophage-derived protein PTMA induces filamentation of the human fungal pathogen Candida albicans

Cell reports (Cambridge), 2021-08, Vol.36 (8), p.109584-109584, Article 109584

2021

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Location of Traumatic Cranial Epidural Hematoma Correlates with the Source of Hemorrhage: A 12-Year Surgical Review

World neurosurgery, 2021-08, Vol.152, p.e138-e143

2021

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The cell-cycle regulatory protein Cks1 is required for SCFSkp2-mediated ubiquitinylation of p27

Nature cell biology, 2001-03, Vol.3 (3), p.321-324

2001

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Albumin Decrease Is Associated with Spontaneous Preterm Delivery within 48 h in Women with Threatened Preterm Labor

Journal of proteome research, 2015-01, Vol.14 (1), p.457-466

2015

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A cost-benefit analysis of multidimensional fractionation of affinity purification-mass spectrometry samples

Proteomics (Weinheim), 2011-07, Vol.11 (13), p.2603-2612

2011

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CIF-1, a Shared Subunit of the COP9/Signalosome and Eukaryotic Initiation Factor 3 Complexes, Regulates MEL-26 Levels in the Caenorhabditis elegans Embryo

Molecular and Cellular Biology, 2007-06, Vol.27 (12), p.4526-4540

2007

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Practical Leverage-Based Sampling for Low-Rank Tensor Decomposition

SIAM journal on matrix analysis and applications, 2022-01, Vol.43 (3), p.1488-1517

2022

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Towards a more general understanding of the algorithmic utility of recurrent connections

PLoS computational biology, 2022-06, Vol.18 (6)

2022

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Tyrosine-phosphorylated Low Density Lipoprotein Receptor-related Protein 1 (LRP1) Associates with the Adaptor Protein SHC in SRC-transformed Cells

The Journal of biological chemistry, 2001-06, Vol.276 (22), p.19119-19125

2001

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Towards a more general understanding of the algorithmic utility of recurrent connections

The Crumbs Complex Couples Cell Density Sensing to Hippo-Dependent Control of the TGF-β-SMAD Pathway

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

A PP2A Phosphatase High Density Interaction Network Identifies a Novel Striatin-interacting Phosphatase and Kinase Complex Linked to the Cerebral Cavernous Malformation 3 (CCM3) Protein

Global Protein Kinase and Phosphatase Interaction Network in Yeast

Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin-Expressing Cells

Variability in Streptavidin–Sepharose Matrix Quality Can Significantly Affect Proximity-Dependent Biotinylation (BioID) Data

ProHits: integrated software for mass spectrometry-based interaction proteomics

Mortality is predicted by Comorbidity Polypharmacy score but not Charlson Comorbidity Index in geriatric trauma patients

BDNF signaling in the VTA links the drug-dependent state to drug withdrawal aversions

Glucagon-like peptide-1 receptor agonists increase pancreatic mass by induction of protein synthesis

Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping

Label-free quantitative proteomics trends for protein–protein interactions

The macrophage-derived protein PTMA induces filamentation of the human fungal pathogen Candida albicans

Location of Traumatic Cranial Epidural Hematoma Correlates with the Source of Hemorrhage: A 12-Year Surgical Review

The cell-cycle regulatory protein Cks1 is required for SCFSkp2-mediated ubiquitinylation of p27

Albumin Decrease Is Associated with Spontaneous Preterm Delivery within 48 h in Women with Threatened Preterm Labor

A cost-benefit analysis of multidimensional fractionation of affinity purification-mass spectrometry samples

CIF-1, a Shared Subunit of the COP9/Signalosome and Eukaryotic Initiation Factor 3 Complexes, Regulates MEL-26 Levels in the Caenorhabditis elegans Embryo

Practical Leverage-Based Sampling for Low-Rank Tensor Decomposition

Towards a more general understanding of the algorithmic utility of recurrent connections

Tyrosine-phosphorylated Low Density Lipoprotein Receptor-related Protein 1 (LRP1) Associates with the Adaptor Protein SHC in SRC-transformed Cells

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