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Breaking spore dormancy in budding yeast transforms the cytoplasm and the solubility of the proteome

PLoS biology, 2023-04, Vol.21 (4), p.e3002042-e3002042

2023

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Regulation plays a multifaceted role in the retention of gene duplicates

PLoS biology, 2019-11, Vol.17 (11), p.e3000519-e3000519

2019

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Molecular and cellular bases of adaptation to a changing environment in microorganisms

Proceedings of the Royal Society. B, Biological sciences, 2016-10, Vol.283 (1841), p.20161458

2016

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Paralog dependency indirectly affects the robustness of human cells

Molecular systems biology, 2019-09, Vol.15 (9), p.e8871-n/a

2019

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Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance

Genome research, 2022-11, Vol.32 (11-12), p.2043-2056

2022

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Evolutionary trade-off and mutational bias could favor transcriptional over translational divergence within paralog pairs

PLoS genetics, 2023-05, Vol.19 (5), p.e1010756-e1010756

2023

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The Calcineurin Signaling Network Evolves via Conserved Kinase-Phosphatase Modules that Transcend Substrate Identity

Molecular cell, 2014-08, Vol.55 (3), p.422-435

2014

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SRC homology 3 domains: multifaceted binding modules

Trends in biochemical sciences (Amsterdam. Regular ed.), 2022-09, Vol.47 (9), p.772-784

2022

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Perturbing proteomes at single residue resolution using base editing

Nature communications, 2020-04, Vol.11 (1), p.1871-13, Article 1871

2020

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Functional divergence and evolutionary turnover in mammalian phosphoproteomes

PLoS genetics, 2014-01, Vol.10 (1), p.e1004062-e1004062

2014

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Expression attenuation as a mechanism of robustness against gene duplication

Proceedings of the National Academy of Sciences - PNAS, 2021-02, Vol.118 (6), p.1-10

2021

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Spontaneous whole-genome duplication restores fertility in interspecific hybrids

Nature communications, 2019-09, Vol.10 (1), p.4126-10, Article 4126

2019

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Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

Nature communications, 2019-02, Vol.10 (1), p.923-923, Article 923

2019

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Evolutionary biology through the lens of budding yeast comparative genomics

Nature reviews. Genetics, 2017-10, Vol.18 (10), p.581-598

2017

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in Vivo Map of the Yeast Protein Interactome

Science (American Association for the Advancement of Science), 2008-06, Vol.320 (5882), p.1465-1470

2008

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beditor : A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing

Genetics (Austin), 2019-06, Vol.212 (2), p.377-385

2019

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Mutational biases favor complexity increases in protein interaction networks after gene duplication

Molecular systems biology, 2024-05, Vol.20 (5), p.549-572

2024

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The effect of hybridization on transposable element accumulation in an undomesticated fungal species

eLife, 2020-09, Vol.9

2020

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Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

PLoS genetics, 2016-07, Vol.12 (7), p.e1006155-e1006155

2016

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Extracting Insight from Noisy Cellular Networks

Cell, 2013-11, Vol.155 (5), p.983-989

2013

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Cross-feeding affects the target of resistance evolution to an antifungal drug

PLoS genetics, 2023-10, Vol.19 (10), p.e1011002-e1011002

2023

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Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

PLoS biology, 2008-11, Vol.6 (11), p.e277-e277

2008

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genome-wide view of the spectrum of spontaneous mutations in yeast

Proceedings of the National Academy of Sciences - PNAS, 2008-07, Vol.105 (27), p.9272-9277

2008

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Deep mutational scanning of Pneumocystis jirovecii dihydrofolate reductase reveals allosteric mechanism of resistance to an antifolate

PLoS genetics, 2024-04, Vol.20 (4), p.e1011252

2024

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Found in translation: functions and evolution of a recently discovered alternative proteome

Current opinion in structural biology, 2015-06, Vol.32, p.74-80

2015

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Breaking spore dormancy in budding yeast transforms the cytoplasm and the solubility of the proteome

Regulation plays a multifaceted role in the retention of gene duplicates

Molecular and cellular bases of adaptation to a changing environment in microorganisms

Paralog dependency indirectly affects the robustness of human cells

Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance

Evolutionary trade-off and mutational bias could favor transcriptional over translational divergence within paralog pairs

The Calcineurin Signaling Network Evolves via Conserved Kinase-Phosphatase Modules that Transcend Substrate Identity

SRC homology 3 domains: multifaceted binding modules

Perturbing proteomes at single residue resolution using base editing

Functional divergence and evolutionary turnover in mammalian phosphoproteomes

Expression attenuation as a mechanism of robustness against gene duplication

Spontaneous whole-genome duplication restores fertility in interspecific hybrids

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

Evolutionary biology through the lens of budding yeast comparative genomics

in Vivo Map of the Yeast Protein Interactome

beditor : A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing

Mutational biases favor complexity increases in protein interaction networks after gene duplication

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

Extracting Insight from Noisy Cellular Networks

Cross-feeding affects the target of resistance evolution to an antifungal drug

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

genome-wide view of the spectrum of spontaneous mutations in yeast

Deep mutational scanning of Pneumocystis jirovecii dihydrofolate reductase reveals allosteric mechanism of resistance to an antifolate

Found in translation: functions and evolution of a recently discovered alternative proteome

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