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An invariants-based method for efficient identification of hybrid species from large-scale genomic data

BMC ecology and evolution, 2019-05, Vol.19 (1), p.112, Article 112

2019

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Reduced susceptibility to praziquantel among naturally occurring Kenyan isolates of Schistosoma mansoni

PLoS neglected tropical diseases, 2009-08, Vol.3 (8), p.e504-e504

2009

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Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data

Systematic biology, 2021-08, Vol.70 (5), p.891-907

2021

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Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys

BMC evolutionary biology, 2011-03, Vol.11 (1), p.77, Article 77

2011

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Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies

BMC bioinformatics, 2013-06, Vol.14 (1), p.200-200, Article 200

2013

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HyDe: A Python Package for Genome-Scale Hybridization Detection

Systematic biology, 2018-09, Vol.67 (5), p.821

2018

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On the effects of selection and mutation on species tree inference

Molecular phylogenetics and evolution, 2023-02, Vol.179, p.107650-107650, Article 107650

2023

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SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data

Bioinformatics, 2018-02, Vol.34 (3), p.407-415

2018

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STEM: species tree estimation using maximum likelihood for gene trees under coalescence

Bioinformatics, 2009-04, Vol.25 (7), p.971-973

2009

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Distribution of coalescent histories under the coalescent model with gene flow

Molecular phylogenetics and evolution, 2016-12, Vol.105, p.177-192

2016

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Inferring Species-Level Phylogenies and Taxonomic Distinctiveness Using Multilocus Data in Sistrurus Rattlesnakes

Systematic biology, 2011-07, Vol.60 (4), p.393-409

2011

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Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

Systematic biology, 2010-10, Vol.59 (5), p.573-583

2010

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Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data

Systematic biology, 2018-05, Vol.67 (3), p.439-457

2018

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Split Scores: A Tool to Quantify Phylogenetic Signal in Genome-Scale Data

Systematic biology, 2017-07, Vol.66 (4), p.620-636

2017

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Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs

Systematic biology, 2022-02, Vol.71 (2), p.367-381

2022

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Expected pairwise congruence among gene trees under the coalescent model

Molecular phylogenetics and evolution, 2017-01, Vol.106, p.144-150

2017

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Effects of missing data on species tree estimation under the coalescent

Molecular phylogenetics and evolution, 2013-12, Vol.69 (3), p.1057-1062

2013

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Accurate Inference of Tree Topologies from Multiple Sequence Alignments Using Deep Learning

Systematic biology, 2020-03, Vol.69 (2), p.221-233

2020

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Long-Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology-Based Summary Methods

Systematic biology, 2019-03, Vol.68 (2), p.281-297

2019

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Estimating species trees using approximate Bayesian computation

Molecular phylogenetics and evolution, 2011-05, Vol.59 (2), p.354-363

2011

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Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

Molecular ecology resources, 2016-05, Vol.16 (3), p.742-754

2016

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Identification of Hidden Population Structure in Time-Scaled Phylogenies

Systematic biology, 2020-09, Vol.69 (5), p.884-896

2020

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Gene tree rooting methods give distributions that mimic the coalescent process

Molecular phylogenetics and evolution, 2014-01, Vol.70, p.63-69

2014

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Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias)

Systematic biology, 2021-08, Vol.70 (5), p.908-921

2021

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Bayesian Inference of Species Trees using Diffusion Models

Systematic biology, 2021-01, Vol.70 (1), p.145-161

2021

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An invariants-based method for efficient identification of hybrid species from large-scale genomic data

Reduced susceptibility to praziquantel among naturally occurring Kenyan isolates of Schistosoma mansoni

Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data

Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys

Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies

HyDe: A Python Package for Genome-Scale Hybridization Detection

On the effects of selection and mutation on species tree inference

SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

Distribution of coalescent histories under the coalescent model with gene flow

Inferring Species-Level Phylogenies and Taxonomic Distinctiveness Using Multilocus Data in Sistrurus Rattlesnakes

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data

Split Scores: A Tool to Quantify Phylogenetic Signal in Genome-Scale Data

Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs

Expected pairwise congruence among gene trees under the coalescent model

Effects of missing data on species tree estimation under the coalescent

Accurate Inference of Tree Topologies from Multiple Sequence Alignments Using Deep Learning

Long-Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology-Based Summary Methods

Estimating species trees using approximate Bayesian computation

Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

Identification of Hidden Population Structure in Time-Scaled Phylogenies

Gene tree rooting methods give distributions that mimic the coalescent process

Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias)

Bayesian Inference of Species Trees using Diffusion Models

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