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Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens

Genome Biology, 2024-02, Vol.25 (1), p.42-27, Article 42

2024

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Identification of AGR2 Gene-Specific Expression Patterns Associated with Epithelial-Mesenchymal Transition

International journal of molecular sciences, 2022-09, Vol.23 (18), p.10845

2022

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Next-generation sequencing of a combinatorial peptide phage library screened against ubiquitin identifies peptide aptamers that can inhibit the in vitro ubiquitin transfer cascade

Frontiers in microbiology, 2022-12, Vol.13, p.875556-875556

2022

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Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets

Bioinformatics, 2016-01, Vol.32 (1), p.9-16

2016

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Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study

Leukemia, 2019-09, Vol.33 (9), p.2241-2253

2019

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ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data

Bioinformatics (Oxford, England), 2017-02, Vol.33 (3), p.435-437

2017

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On Parameter Synthesis by Parallel Model Checking

IEEE/ACM transactions on computational biology and bioinformatics, 2012-05, Vol.9 (3), p.693-705

2012

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Abstract LB341: Single-cell CRISPR screens in primary human T cells identify regulators of Th2 cell skewing

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (8_Supplement), p.LB341-LB341

2023

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Abstract LB249: A genome-scale CROP-seq screen reveals mediators of T cell signaling

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (8_Supplement), p.LB249-LB249

2023

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Abstract LB289: Single-cell CRISPR screens at scale to understand T cell biology

Cancer research (Chicago, Ill.), 2024-04, Vol.84 (7_Supplement), p.LB289-LB289

2024

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GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data

Bioinformatics (Oxford, England), 2017-12, Vol.33 (23), p.3802-3804

2017

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High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans

Clinical immunology (Orlando, Fla.), 2017-10, Vol.183, p.8-16

2017

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High Resolution Igh Repertoire Analysis Reveals the Human Fetal Liver As the Origin of Life-Long, Innate B Lymphopoiesis

Blood, 2016-12, Vol.128 (22), p.127-127

2016

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High resolution IgH repertoire analysis reveals fetal liver as the origin of life-long, innate B lymphopoiesis in humans

Clinical immunology (Orlando, Fla.), 2016

2016

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T-Prolymphocytic Leukemia Is Sensitive to Polyclonal T Cell-Derived Graft-Versus-Leukemia Effects: Evidence from Minimal Residual Disease Kinetics and TCR Repertoire Diversity Analyses

Blood, 2015-12, Vol.126 (23), p.3159-3159

2015

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Discovery of a novel ligand that modulates the protein-protein interactions of the AAA+ superfamily oncoprotein reptin

Chemical science (Cambridge), 2015-05, Vol.6 (5), p.3109-3116

2015

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Abstract 2334: Identification of differentially expressed genes and somatic mutations in esophageal adenocarinoma cancer patients

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.2334-2334

2014

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Discovery of a novel ligand that modulates the protein-protein interactions of the AAA+ superfamily oncoprotein reptinElectronic supplementary information (ESI) available. See DOI: 10.1039/c4sc03885a

2015-04

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Discovery of a novel ligand that modulates the protein–protein interactions of the AAA+ superfamily oncoprotein reptin† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c4sc03885a Click here for additional data file

Chemical science (Cambridge), 2015-03, Vol.6 (5), p.3109-3116

2015

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Bioinformatics and Next -generation Sequencing

Klinická onkologie, 2015-09, Vol.28 Suppl 2 (Suppl 2), p.2S91-2S96

2015

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Soft-tissue extramedullary multiple myeloma prognosis is significantly worse in comparison to bone-related extramedullary relapse

Haematologica (Roma), 2014-02, Vol.99 (2), p.360-364

2014

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Biphenylene network: A nonbenzenoid carbon allotrope

Science (American Association for the Advancement of Science), 2021-05, Vol.372 (6544), p.852-856

2021

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CAR-T cells for the treatment of relapsed/refractory multiple myeloma in 2022: efficacy and toxicity

Neoplasma, 2022-09, Vol.69 (5), p.1008-1018

2022

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Automated structure discovery in atomic force microscopy

Science advances, 2020-02, Vol.6 (9), p.eaay6913-eaay6913

2020

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Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens

Identification of AGR2 Gene-Specific Expression Patterns Associated with Epithelial-Mesenchymal Transition

Next-generation sequencing of a combinatorial peptide phage library screened against ubiquitin identifies peptide aptamers that can inhibit the in vitro ubiquitin transfer cascade

Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data

On Parameter Synthesis by Parallel Model Checking

Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS

Abstract LB341: Single-cell CRISPR screens in primary human T cells identify regulators of Th2 cell skewing

Abstract LB249: A genome-scale CROP-seq screen reveals mediators of T cell signaling

Abstract LB289: Single-cell CRISPR screens at scale to understand T cell biology

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data

High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans

High Resolution Igh Repertoire Analysis Reveals the Human Fetal Liver As the Origin of Life-Long, Innate B Lymphopoiesis

High resolution IgH repertoire analysis reveals fetal liver as the origin of life-long, innate B lymphopoiesis in humans

T-Prolymphocytic Leukemia Is Sensitive to Polyclonal T Cell-Derived Graft-Versus-Leukemia Effects: Evidence from Minimal Residual Disease Kinetics and TCR Repertoire Diversity Analyses

Discovery of a novel ligand that modulates the protein-protein interactions of the AAA+ superfamily oncoprotein reptin

Abstract 2334: Identification of differentially expressed genes and somatic mutations in esophageal adenocarinoma cancer patients

Discovery of a novel ligand that modulates the protein-protein interactions of the AAA+ superfamily oncoprotein reptinElectronic supplementary information (ESI) available. See DOI: 10.1039/c4sc03885a

Discovery of a novel ligand that modulates the protein–protein interactions of the AAA+ superfamily oncoprotein reptin† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c4sc03885a Click here for additional data file

Bioinformatics and Next -generation Sequencing

Soft-tissue extramedullary multiple myeloma prognosis is significantly worse in comparison to bone-related extramedullary relapse

Biphenylene network: A nonbenzenoid carbon allotrope

CAR-T cells for the treatment of relapsed/refractory multiple myeloma in 2022: efficacy and toxicity

Automated structure discovery in atomic force microscopy

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