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Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins

Viruses, 2020-03, Vol.12 (4), p.360

2020

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Computational protein modeling and the next viral pandemic

Nature methods, 2021-05, Vol.18 (5), p.444-445

2021

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Asymmetric trichotomous partitioning overcomes dataset limitations in building machine learning models for predicting siRNA efficacy

Molecular therapy. Nucleic acids, 2023-09, Vol.33, p.93-109

2023

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Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning

PLoS computational biology, 2014-05, Vol.10 (5), p.e1003592

2014

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The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations

Biomolecules (Basel, Switzerland), 2023-12, Vol.14 (1), p.40

2023

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Integrating diverse data for structure determination of macromolecular assemblies

Annual review of biochemistry, 2008-01, Vol.77 (1), p.443-477

2008

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Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping

Nature communications, 2023-01, Vol.14 (1), p.186-9, Article 186

2023

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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

BMC genomics, 2019-02, Vol.20 (1), p.119-14, Article 119

2019

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Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Nature communications, 2014-04, Vol.5 (1), p.3650-3650, Article 3650

2014

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Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases

Genes, 2019-11, Vol.10 (11), p.933

2019

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Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

BMC genomics, 2024-05, Vol.25 (1), p.537-1, Article 537

2024

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Literature mining of host―pathogen interactions: comparing feature-based supervised learning and language-based approaches

Bioinformatics (Oxford, England), 2012-03, Vol.28 (6), p.867-875

2012

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Proteins, structure, function, and bioinformatics, 2013-11, Vol.81 (11), p.1980-1987

2013

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Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Nature communications, 2023-02, Vol.14 (1), p.569-569, Article 569

2023

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Dual roles for the variable domain in protein trafficking and host-specific recognition of Heterodera glycines CLE effector proteins

The New phytologist, 2010-09, Vol.187 (4), p.1003-1017

2010

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Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle

Journal of bacteriology, 2016-04, Vol.198 (7), p.1149-1159

2016

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Evidence of positive selection in mitochondrial complexes I and V of the African elephant

PloS one, 2014-04, Vol.9 (4), p.e92587-e92587

2014

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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids

Scientific reports, 2017-07, Vol.7 (1), p.5550-12, Article 5550

2017

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Long identical multispecies elements in plant and animal genomes

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.E1183-E1191

2012

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Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome

PloS one, 2013-11, Vol.8 (11), p.e81027-e81027

2013

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Histological quantitation of brain injury using whole slide imaging: a pilot validation study in mice

PloS one, 2014-03, Vol.9 (3), p.e92133-e92133

2014

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Unravelling psychiatric heterogeneity and predicting suicide attempts in women with trauma-related dissociation using artificial intelligence

European journal of psychotraumatology, 2022-12, Vol.13 (2), p.2143693

2022

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Structural similarity and classification of protein interaction interfaces

PloS one, 2011-05, Vol.6 (5), p.e19554-e19554

2011

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DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions

Database : the journal of biological databases and curation, 2016, Vol.2016

2016

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Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break

Genes & development, 2008-04, Vol.22 (7), p.854-859

2008

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Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins

Computational protein modeling and the next viral pandemic

Asymmetric trichotomous partitioning overcomes dataset limitations in building machine learning models for predicting siRNA efficacy

Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning

The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations

Integrating diverse data for structure determination of macromolecular assemblies

Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Enriching Human Interactome with Functional Mutations to Detect High-Impact Network Modules Underlying Complex Diseases

Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Literature mining of host―pathogen interactions: comparing feature-based supervised learning and language-based approaches

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Dual roles for the variable domain in protein trafficking and host-specific recognition of Heterodera glycines CLE effector proteins

Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle

Evidence of positive selection in mitochondrial complexes I and V of the African elephant

Controlled modification of biomolecules by ultrashort laser pulses in polar liquids

Long identical multispecies elements in plant and animal genomes

Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome

Histological quantitation of brain injury using whole slide imaging: a pilot validation study in mice

Unravelling psychiatric heterogeneity and predicting suicide attempts in women with trauma-related dissociation using artificial intelligence

Structural similarity and classification of protein interaction interfaces

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions

Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break

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