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Tackling antibiotic resistance: the environmental framework

Nature reviews. Microbiology, 2015-05, Vol.13 (5), p.310-317

2015

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Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load

PloS one, 2014-08, Vol.9 (8), p.e103705

2014

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A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006434-e1006434

2018

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Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish

mSphere, 2017-11, Vol.2 (6)

2017

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The prevalence, counts, and MLST genotypes of Campylobacter in poultry meat and genomic comparison with clinical isolates

Poultry science, 2022-04, Vol.101 (4), p.101703-101703, Article 101703

2022

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Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

MycoKeys (Sofia, Bulgaria), 2015-01, Vol.10 (10), p.1-43

2015

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Endophytic bacterial communities in peels and pulp of five root vegetables

PloS one, 2019-01, Vol.14 (1), p.e0210542-e0210542

2019

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Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs

Frontiers in microbiology, 2021-03, Vol.12, p.601490-601490

2021

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Distinct bacterial communities in tropical island aquifers

PloS one, 2020-04, Vol.15 (4), p.e0232265

2020

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Investigation of 29 Antimicrobial Compounds in Soil Using Newly Developed UHPLC-MS/MS Method

Molecules (Basel, Switzerland), 2023-09, Vol.28 (18), p.6496

2023

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Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring

PloS one, 2012-08, Vol.7 (8), p.e43630

2012

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Highly Continuous Genome Assembly of Eurasian Perch ( Perca fluviatilis ) Using Linked-Read Sequencing

G3 : genes - genomes - genetics, 2018-12, Vol.8 (12), p.3737-3743

2018

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Sedimentary Ancient DNA (sedaDNA) Reveals Fungal Diversity and Environmental Drivers of Community Changes throughout the Holocene in the Present Boreal Lake Lielais Svētiņu (Eastern Latvia)

Microorganisms (Basel), 2021-03, Vol.9 (4), p.719

2021

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Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals

BMC infectious diseases, 2018-10, Vol.18 (1), p.513-513, Article 513

2018

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Distinct stages of the intestinal bacterial community of Ampullaceana balthica after salinization

Frontiers in microbiology, 2022-08, Vol.13, p.767334-767334

2022

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Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis

Frontiers in microbiology, 2020-05, Vol.11, p.683-683

2020

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Distinct biogeographical patterns in snail gastrointestinal tract bacterial communities compared with sediment and water

MicrobiologyOpen (Weinheim), 2024-06, Vol.13 (3), p.e13-n/a

2024

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Resistance of freshwater sediment bacterial communities to salinity disturbance and the implication for industrial salt discharge and climate change-based salinization

Frontiers in microbiomes, 2023-11, Vol.2

2023

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Chironomid incorporation of methane‐derived carbon in plankton‐ and macrophyte‐dominated habitats in a large shallow lake

Freshwater biology, 2018-11, Vol.63 (11), p.1433-1445

2018

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Using Microcystin Gene Copies to Determine Potentially-Toxic Blooms, Example from a Shallow Eutrophic Lake Peipsi

Toxins, 2020-03, Vol.12 (4), p.211

2020

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Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea)

PloS one, 2016-05, Vol.11 (5), p.e0156147-e0156147

2016

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Humic-acid-driven escape from eye parasites revealed by RNA-seq and target-specific metabarcoding

Parasites & vectors, 2020-08, Vol.13 (1), p.433-433, Article 433

2020

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Aeromonas and Pseudomonas Species Carriers of ampC FOX Genes in Aquatic Environments

Applied and Environmental Microbiology, 2013-02, Vol.79 (3), p.1055-1057

2013

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Redox-specialized bacterioplankton metacommunity in a temperate estuary

PloS one, 2015-04, Vol.10 (4), p.e0122304-e0122304

2015

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Antibiotic Resistance in Campylobacter spp. Isolated from Broiler Chicken Meat and Human Patients in Estonia

Microorganisms (Basel), 2022-05, Vol.10 (5), p.1067

2022

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Tackling antibiotic resistance: the environmental framework

Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish

The prevalence, counts, and MLST genotypes of Campylobacter in poultry meat and genomic comparison with clinical isolates

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

Endophytic bacterial communities in peels and pulp of five root vegetables

Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs

Distinct bacterial communities in tropical island aquifers

Investigation of 29 Antimicrobial Compounds in Soil Using Newly Developed UHPLC-MS/MS Method

Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring

Highly Continuous Genome Assembly of Eurasian Perch ( Perca fluviatilis ) Using Linked-Read Sequencing

Sedimentary Ancient DNA (sedaDNA) Reveals Fungal Diversity and Environmental Drivers of Community Changes throughout the Holocene in the Present Boreal Lake Lielais Svētiņu (Eastern Latvia)

Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals

Distinct stages of the intestinal bacterial community of Ampullaceana balthica after salinization

Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis

Distinct biogeographical patterns in snail gastrointestinal tract bacterial communities compared with sediment and water

Resistance of freshwater sediment bacterial communities to salinity disturbance and the implication for industrial salt discharge and climate change-based salinization

Chironomid incorporation of methane‐derived carbon in plankton‐ and macrophyte‐dominated habitats in a large shallow lake

Using Microcystin Gene Copies to Determine Potentially-Toxic Blooms, Example from a Shallow Eutrophic Lake Peipsi

Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea)

Humic-acid-driven escape from eye parasites revealed by RNA-seq and target-specific metabarcoding

Aeromonas and Pseudomonas Species Carriers of ampC FOX Genes in Aquatic Environments

Redox-specialized bacterioplankton metacommunity in a temperate estuary

Antibiotic Resistance in Campylobacter spp. Isolated from Broiler Chicken Meat and Human Patients in Estonia

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