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A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

BMC genomics, 2016-01, Vol.17 (37), p.55-55, Article 55

2016

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Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

Nature communications, 2019-03, Vol.10 (1), p.1107-1107, Article 1107

2019

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From Farm to Fork: Streptococcus suis as a Model for the Development of Novel Phage-Based Biocontrol Agents

Viruses, 2022-09, Vol.14 (9), p.1996

2022

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Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences

Scientific reports, 2021-02, Vol.11 (1), p.4565-18, Article 4565

2021

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The Staphylococcus aureus response to unsaturated long chain free fatty acids: survival mechanisms and virulence implications

PloS one, 2009-02, Vol.4 (2), p.e4344-e4344

2009

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Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol

BMJ open, 2023-05, Vol.13 (5), p.e067766-e067766

2023

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Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma

Cancers, 2020-04, Vol.12 (4), p.1039

2020

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Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli

Applied and Environmental Microbiology, 2015-12, Vol.81 (23), p.8118-8125

2015

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Global Regulatory Frameworks for Fermented Foods: A Review

Frontiers in nutrition (Lausanne), 2022-05, Vol.9, p.902642

2022

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The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods

Foods, 2022-10, Vol.11 (20), p.3297

2022

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Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach

Gut microbes, 2021-01, Vol.13 (1), p.1930871-1930871

2021

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Comparative Genomics and Transduction Potential of Enterococcus faecalis Temperate Bacteriophages

Journal of Bacteriology, 2010-02, Vol.192 (4), p.1122-1130

2010

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SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms

BioTechniques, 2017-07, Vol.63 (1), p.13-20

2017

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Mannitol utilisation is required for protection of Staphylococcus aureus from human skin antimicrobial fatty acids

PloS one, 2013-07, Vol.8 (7), p.e67698

2013

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Bacteriophage Tuc2009 Encodes a Tail-Associated Cell Wall-Degrading Activity

Journal of Bacteriology, 2004-06, Vol.186 (11), p.3480-3491

2004

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Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline

The ISME Journal, 2018-02, Vol.12 (2), p.386-399

2018

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The impact of live dietary microbes on health: A scoping review

Journal of food science, 2024-02, Vol.89 (2), p.773-792

2024

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DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

Scientific reports, 2019-06, Vol.9 (1), p.9328-17, Article 9328

2019

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Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus)

Molecular biology and evolution, 2015-04, Vol.32 (4), p.888-895

2015

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A Framework for Multi-Omic Prediction of Treatment Response to Biologic Therapy for Psoriasis

Journal of investigative dermatology, 2019-01, Vol.139 (1), p.100-107

2019

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Panel sequencing links rare, likely damaging gene variants with distinct clinical phenotypes and outcomes in juvenile-onset SLE

Rheumatology (Oxford, England), 2023-02, Vol.62 (SI2), p.SI210-SI225

2023

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The ClgR Protein Regulates Transcription of the clpP Operon in Bifidobacterium breve UCC 2003

Journal of Bacteriology, 2005-12, Vol.187 (24), p.8411-8426

2005

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Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

Molecular ecology, 2014-11, Vol.23 (21), p.5179-5192

2014

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GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

Microbial genomics, 2024-06, Vol.10 (6)

2024

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The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction

Microbiology (Society for General Microbiology), 2005-09, Vol.151 (Pt 9), p.2861-2872

2005

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A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

From Farm to Fork: Streptococcus suis as a Model for the Development of Novel Phage-Based Biocontrol Agents

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences

The Staphylococcus aureus response to unsaturated long chain free fatty acids: survival mechanisms and virulence implications

Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol

Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma

Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli

Global Regulatory Frameworks for Fermented Foods: A Review

The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods

Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach

Comparative Genomics and Transduction Potential of Enterococcus faecalis Temperate Bacteriophages

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms

Mannitol utilisation is required for protection of Staphylococcus aureus from human skin antimicrobial fatty acids

Bacteriophage Tuc2009 Encodes a Tail-Associated Cell Wall-Degrading Activity

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline

The impact of live dietary microbes on health: A scoping review

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus)

A Framework for Multi-Omic Prediction of Treatment Response to Biologic Therapy for Psoriasis

Panel sequencing links rare, likely damaging gene variants with distinct clinical phenotypes and outcomes in juvenile-onset SLE

The ClgR Protein Regulates Transcription of the clpP Operon in Bifidobacterium breve UCC 2003

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction

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