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Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity

Nature communications, 2020-04, Vol.11 (1), p.2117-2117, Article 2117

2020

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We need to keep a reproducible trace of facts, predictions, and hypotheses from gene to function in the era of big data

PLoS biology, 2020-11, Vol.18 (11), p.e3000999-e3000999

2020

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Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

Cell, 2014-04, Vol.157 (3), p.580-594

2014

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High-throughput mediation analysis of human proteome and metabolome identifies mediators of post-bariatric surgical diabetes control

Nature communications, 2021-11, Vol.12 (1), p.6951-6951, Article 6951

2021

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

PLoS biology, 2007-01, Vol.5 (1), p.e8-e8

2007

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Deep sequencing of the oral microbiome reveals signatures of periodontal disease

PloS one, 2012-06, Vol.7 (6), p.e37919

2012

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Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

PLoS genetics, 2008-10, Vol.4 (10), p.e1000242-e1000242

2008

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An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma

Cell reports (Cambridge), 2013-05, Vol.3 (5), p.1567-1579

2013

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Defects in muscle branched-chain amino acid oxidation contribute to impaired lipid metabolism

Molecular metabolism (Germany), 2016-10, Vol.5 (10), p.926-936

2016

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To supplement or not to supplement: a metabolic network framework for human nutritional supplements

PloS one, 2013-08, Vol.8 (8), p.e68751-e68751

2013

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Immediate-Early and Delayed Primary Response Genes Are Distinct in Function and Genomic Architecture

The Journal of biological chemistry, 2007-08, Vol.282 (33), p.23981-23995

2007

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Probabilistic protein function prediction from heterogeneous genome-wide data

PloS one, 2007-03, Vol.2 (3), p.e337-e337

2007

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Whole-Genome Annotation by Using Evidence Integration in Functional-Linkage Networks

Proceedings of the National Academy of Sciences - PNAS, 2004-03, Vol.101 (9), p.2888-2893

2004

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Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

PloS one, 2013-06, Vol.8 (6), p.e66605-e66605

2013

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Membrane metallo-endopeptidase (Neprilysin) regulates inflammatory response and insulin signaling in white preadipocytes

Molecular metabolism (Germany), 2019-04, Vol.22, p.21-36

2019

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One for all and all for One: Improving replication of genetic studies through network diffusion

PLoS genetics, 2018-04, Vol.14 (4), p.e1007306-e1007306

2018

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Network-based analysis of affected biological processes in type 2 diabetes models

PLoS genetics, 2007-06, Vol.3 (6), p.e96-e96

2007

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Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes

Cell reports (Cambridge), 2017-12, Vol.21 (11), p.3040-3048

2017

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Hypermutable DNA chronicles the evolution of human colon cancer

Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (18), p.E1889-E1898

2014

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Analysis of brain region-specific co-expression networks reveals clustering of established and novel genes associated with Alzheimer disease

Alzheimer's research & therapy, 2020-09, Vol.12 (1), p.103-103, Article 103

2020

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RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli

Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (6), p.1826-1831

2008

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Towards the identification of essential genes using targeted genome sequencing and comparative analysis

BMC genomics, 2006-10, Vol.7 (1), p.265-265, Article 265

2006

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Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

Molecular metabolism (Germany), 2015-03, Vol.4 (3), p.151-163

2015

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GC/AT-Content Spikes as Genomic Punctuation Marks

Proceedings of the National Academy of Sciences - PNAS, 2004-11, Vol.101 (48), p.16855-16860

2004

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Biological context networks: a mosaic view of the interactome

Molecular systems biology, 2006, Vol.2 (1), p.66-n/a

2006

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Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity

We need to keep a reproducible trace of facts, predictions, and hypotheses from gene to function in the era of big data

Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

High-throughput mediation analysis of human proteome and metabolome identifies mediators of post-bariatric surgical diabetes control

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

Deep sequencing of the oral microbiome reveals signatures of periodontal disease

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma

Defects in muscle branched-chain amino acid oxidation contribute to impaired lipid metabolism

To supplement or not to supplement: a metabolic network framework for human nutritional supplements

Immediate-Early and Delayed Primary Response Genes Are Distinct in Function and Genomic Architecture

Probabilistic protein function prediction from heterogeneous genome-wide data

Whole-Genome Annotation by Using Evidence Integration in Functional-Linkage Networks

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

Membrane metallo-endopeptidase (Neprilysin) regulates inflammatory response and insulin signaling in white preadipocytes

One for all and all for One: Improving replication of genetic studies through network diffusion

Network-based analysis of affected biological processes in type 2 diabetes models

Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes

Hypermutable DNA chronicles the evolution of human colon cancer

Analysis of brain region-specific co-expression networks reveals clustering of established and novel genes associated with Alzheimer disease

RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

GC/AT-Content Spikes as Genomic Punctuation Marks

Biological context networks: a mosaic view of the interactome

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