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Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells

Nature communications, 2019-05, Vol.10 (1), p.2163-2163, Article 2163

2019

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Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

American journal of human genetics, 2012-11, Vol.91 (5), p.839-848

2012

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Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

Genetics (Austin), 2008-12, Vol.180 (4), p.1909-1925

2008

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Meta-imputation of transcriptome from genotypes across multiple datasets by leveraging publicly available summary-level data

PLoS genetics, 2022-01, Vol.18 (1), p.e1009571-e1009571

2022

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A high-resolution association mapping panel for the dissection of complex traits in mice

Genome research, 2010-02, Vol.20 (2), p.281-290

2010

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Unified representation of genetic variants

Bioinformatics, 2015-07, Vol.31 (13), p.2202-2204

2015

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Microscopic examination of spatial transcriptome using Seq-Scope

Cell, 2021-06, Vol.184 (13), p.3559-3572.e22

2021

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An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data

Genome research, 2015-06, Vol.25 (6), p.918-925

2015

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Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies

Nature genetics, 2018-09, Vol.50 (9), p.1335-1341

2018

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Variance component model to account for sample structure in genome-wide association studies

Nature genetics, 2010-04, Vol.42 (4), p.348-354

2010

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Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture

Nature communications, 2020-11, Vol.11 (1), p.5963-5963, Article 5963

2020

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Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

Nature (London), 2013-01, Vol.493 (7431), p.216-220

2013

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Rapid and accurate multiple testing correction and power estimation for millions of correlated markers

PLoS genetics, 2009-04, Vol.5 (4), p.e1000456-e1000456

2009

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Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

Science (American Association for the Advancement of Science), 2012-07, Vol.337 (6090), p.64-69

2012

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Low-coverage sequencing: implications for design of complex trait association studies

Genome research, 2011-06, Vol.21 (6), p.940-951

2011

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A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy

PLoS genetics, 2017-01, Vol.13 (1), p.e1006529-e1006529

2017

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Efficient Control of Population Structure in Model Organism Association Mapping

Genetics (Austin), 2008-03, Vol.178 (3), p.1709-1723

2008

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Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium

Nature communications, 2020-10, Vol.11 (1), p.5139-18, Article 5139

2020

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Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

Nature communications, 2018-10, Vol.9 (1), p.4038-8, Article 4038

2018

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Ancestry-agnostic estimation of DNA sample contamination from sequence reads

Genome research, 2020-02, Vol.30 (2), p.185-194

2020

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Holistic characterization of single-hepatocyte transcriptome responses to high-fat diet

American journal of physiology: endocrinology and metabolism, 2021-02, Vol.320 (2), p.E244-E258

2021

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emeraLD: rapid linkage disequilibrium estimation with massive datasets

Bioinformatics, 2019-01, Vol.35 (1), p.164-166

2019

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Extremely rare variants reveal patterns of germline mutation rate heterogeneity in humans

Nature communications, 2018-09, Vol.9 (1), p.3753-13, Article 3753

2018

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Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools

PLoS genetics, 2015-07, Vol.11 (7), p.e1005306-e1005306

2015

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Integrating comprehensive functional annotations to boost power and accuracy in gene-based association analysis

PLoS genetics, 2020-12, Vol.16 (12), p.e1009060-e1009060

2020

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Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

Meta-imputation of transcriptome from genotypes across multiple datasets by leveraging publicly available summary-level data

A high-resolution association mapping panel for the dissection of complex traits in mice

Unified representation of genetic variants

Microscopic examination of spatial transcriptome using Seq-Scope

An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data

Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies

Variance component model to account for sample structure in genome-wide association studies

Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

Rapid and accurate multiple testing correction and power estimation for millions of correlated markers

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

Low-coverage sequencing: implications for design of complex trait association studies

A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy

Efficient Control of Population Structure in Model Organism Association Mapping

Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

Ancestry-agnostic estimation of DNA sample contamination from sequence reads

Holistic characterization of single-hepatocyte transcriptome responses to high-fat diet

emeraLD: rapid linkage disequilibrium estimation with massive datasets

Extremely rare variants reveal patterns of germline mutation rate heterogeneity in humans

Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools

Integrating comprehensive functional annotations to boost power and accuracy in gene-based association analysis

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