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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007447-e1007447

2020

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A critical analysis of computational protein design with sparse residue interaction graphs

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005346-e1005346

2017

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OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

Journal of computational chemistry, 2018-11, Vol.39 (30), p.2494-2507

2018

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BBK (Branch and Bound Over K): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Journal of computational biology, 2018-07, Vol.25 (7), p.726-739

2018

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Minimization-Aware Recursive K: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

Journal of computational biology, 2020-04, Vol.27 (4), p.550-564

2020

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BWM: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Journal of computational biology, 2016-06, Vol.23 (6), p.413-424

2016

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Journal of computational biology, 2017-06, Vol.24 (6), p.536-546

2017

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Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand

The journal of physical chemistry. B, 2019-12, Vol.123 (49), p.10441-10455

2019

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

Biophysical journal, 2017-02, Vol.112 (3), p.194a-194a

2017

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

Research in Computational Molecular Biology, 2016, p.122-136

2016

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BWM: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Research in Computational Molecular Biology, 2015, Vol.9029, p.154-166

2015

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Algorithmic Advances and Applications from RECOMB 2017

Cell systems, 2017-09, Vol.5 (3), p.176-186

2017

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Minimization-Aware Recursive K∗\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$K^{}$$\end{document} (MARK∗\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt}

Research in Computational Molecular Biology, 2019, p.101-119

2019

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documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$BBK^$$\end{document} (Branch and Bound over \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document

Research in Computational Molecular Biology, 2017, p.157-172

2017

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Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin

eLife, 2021-07, Vol.10

2021

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Mef2d potentiates type-2 immune responses and allergic lung inflammation Authors

Science (American Association for the Advancement of Science), 2024-06, Vol.384 (6703), p.eadl0370-eadl0370

2024

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Focused Neuro-Otological Review of Superficial Siderosis of the Central Nervous System

Frontiers in neurology, 2018-05, Vol.9, p.358-358

2018

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Mutations in the vesicular trafficking protein annexin A11 are associated with amyotrophic lateral sclerosis

Science translational medicine, 2017-05, Vol.9 (388)

2017

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Mef2d potentiates type-2 immune responses and allergic lung inflammation

Science (American Association for the Advancement of Science), 2024-06, Vol.384 (6703), p.eadl0370

2024

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Prevalence and Outcomes for Heavily Treatment-Experienced Individuals Living With Human Immunodeficiency Virus in a European Cohort

Journal of acquired immune deficiency syndromes (1999), 2021-06, Vol.87 (2), p.806-817

2021

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Seroprevalence, distribution, and risk factors for human leptospirosis in the United States Virgin Islands

PLoS neglected tropical diseases, 2022-11, Vol.16 (11), p.e0010880

2022

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The epithelial sodium channel δ-subunit: new notes for an old song

American journal of physiology. Renal physiology, 2012, Vol.72 (2)

2012

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Assessing the Presidency of Ma Ying-jiu in Taiwan: Hopeful Beginning, Hopeless End?

1st, 2018

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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

A critical analysis of computational protein design with sparse residue interaction graphs

OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

BBK (Branch and Bound Over K): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Minimization-Aware Recursive K: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

BWM: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

BWM: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Algorithmic Advances and Applications from RECOMB 2017

Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin

ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function

Mef2d potentiates type-2 immune responses and allergic lung inflammation Authors

Focused Neuro-Otological Review of Superficial Siderosis of the Central Nervous System

Mutations in the vesicular trafficking protein annexin A11 are associated with amyotrophic lateral sclerosis

Mef2d potentiates type-2 immune responses and allergic lung inflammation

Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study

Prevalence and Outcomes for Heavily Treatment-Experienced Individuals Living With Human Immunodeficiency Virus in a European Cohort

Seroprevalence, distribution, and risk factors for human leptospirosis in the United States Virgin Islands

The epithelial sodium channel δ-subunit: new notes for an old song

Assessing the Presidency of Ma Ying-jiu in Taiwan: Hopeful Beginning, Hopeless End?

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