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Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification

2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016-06, Vol.2016, p.2424-2433

2016

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PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective

The Journal of pathology, 2018-04, Vol.244 (5), p.512-524

2018

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Caveats for the Use of Operational Electronic Health Record Data in Comparative Effectiveness Research

Medical care, 2013-08, Vol.51 (8 Suppl 3), p.S30-S37

2013

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Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble

Medical Image Computing and Computer Assisted Intervention − MICCAI 2017, 2017-09, p.150-158

2017

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Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

Journal of the American Medical Informatics Association : JAMIA, 2013-11, Vol.20 (6), p.1091-1098

2013

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Computational immunohistochemical mapping adds immune context to histological phenotypes in mouse models of colitis

Scientific reports, 2023-09, Vol.13 (1), p.14386-14386, Article 14386

2023

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Deep learning-based approach to the characterization and quantification of histopathology in mouse models of colitis

PloS one, 2022-08, Vol.17 (8), p.e0268954-e0268954

2022

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The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma

The American journal of pathology, 2012-05, Vol.180 (5), p.2108-2119

2012

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Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates

PloS one, 2013-11, Vol.8 (11), p.e81049

2013

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The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

PloS one, 2010-09, Vol.5 (9), p.e12548-e12548

2010

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GlycoPattern: a web platform for glycan array mining

Bioinformatics, 2014-12, Vol.30 (23), p.3417-3418

2014

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A large-scale retrospective study of opioid poisoning in New York State with implications for targeted interventions

Scientific reports, 2021-03, Vol.11 (1), p.5152-10, Article 5152

2021

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An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing

Cancer informatics, 2024-01, Vol.23, p.11769351231223806-11769351231223806

2024

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Robust Histopathology Image Analysis: To Label or to Synthesize?

2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2019, Vol.2019, p.8525-8534

2019

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Integrated morphologic analysis for the identification and characterization of disease subtypes

Journal of the American Medical Informatics Association : JAMIA, 2012-03, Vol.19 (2), p.317-323

2012

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Open and reusable deep learning for pathology with WSInfer and QuPath

NPJ precision oncology, 2024-01, Vol.8 (1), p.9-9, Article 9

2024

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AI in Medical Imaging Informatics: Current Challenges and Future Directions

IEEE journal of biomedical and health informatics, 2020-07, Vol.24 (7), p.1837-1857

2020

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Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images

Pattern recognition, 2019-02, Vol.86, p.188-200

2019

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Building Efficient CNN Architectures for Histopathology Images Analysis: A Case-Study in Tumor-Infiltrating Lymphocytes Classification

Frontiers in medicine, 2022-05, Vol.9, p.894430-894430

2022

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State of machine and deep learning in histopathological applications in digestive diseases

World journal of gastroenterology : WJG, 2021-05, Vol.27 (20), p.2545-2575

2021

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Identifying risk of opioid use disorder for patients taking opioid medications with deep learning

Journal of the American Medical Informatics Association : JAMIA, 2021-07, Vol.28 (8), p.1683-1693

2021

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An expandable informatics framework for enhancing central cancer registries with digital pathology specimens, computational imaging tools, and advanced mining capabilities

Journal of pathology informatics, 2022-01, Vol.13 (1), p.5-5, Article 100167

2022

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Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning

Journal of biomedical informatics, 2021-04, Vol.116, p.103725, Article 103725

2021

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A Methodology for Texture Feature-based Quality Assessment in Nucleus Segmentation of Histopathology Image

Journal of pathology informatics, 2017-01, Vol.8 (1), p.38-38, Article 38

2017

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ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification

Computer methods and programs in biomedicine, 2023-09, Vol.239, p.107631-107631, Article 107631

2023

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Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification

PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective

Caveats for the Use of Operational Electronic Health Record Data in Comparative Effectiveness Research

Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

Computational immunohistochemical mapping adds immune context to histological phenotypes in mouse models of colitis

Deep learning-based approach to the characterization and quantification of histopathology in mouse models of colitis

The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma

Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates

The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

GlycoPattern: a web platform for glycan array mining

A large-scale retrospective study of opioid poisoning in New York State with implications for targeted interventions

An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing

Robust Histopathology Image Analysis: To Label or to Synthesize?

Integrated morphologic analysis for the identification and characterization of disease subtypes

Open and reusable deep learning for pathology with WSInfer and QuPath

AI in Medical Imaging Informatics: Current Challenges and Future Directions

Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images

Building Efficient CNN Architectures for Histopathology Images Analysis: A Case-Study in Tumor-Infiltrating Lymphocytes Classification

State of machine and deep learning in histopathological applications in digestive diseases

Identifying risk of opioid use disorder for patients taking opioid medications with deep learning

An expandable informatics framework for enhancing central cancer registries with digital pathology specimens, computational imaging tools, and advanced mining capabilities

Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning

A Methodology for Texture Feature-based Quality Assessment in Nucleus Segmentation of Histopathology Image

ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification

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