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Ribosome Footprint Profiling of Translation throughout the Genome

Cell, 2016-03, Vol.165 (1), p.22-33

Ingolia, Nicholas T.

2016

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Ribosome profiling: new views of translation, from single codons to genome scale

Nature reviews. Genetics, 2014-03, Vol.15 (3), p.205-213

Ingolia, Nicholas T

2014

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Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

Cell, 2011-11, Vol.147 (4), p.789-802

2011

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Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

Molecular cell, 2019-08, Vol.75 (4), p.875-887.e5

2019

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Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins

Cell, 2013-07, Vol.154 (1), p.240-251

2013

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The Growing Toolbox for Protein Synthesis Studies

Trends in biochemical sciences (Amsterdam. Regular ed.), 2017-08, Vol.42 (8), p.612-624

2017

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Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures

Cell, 2013-08, Vol.154 (5), p.971-982

2013

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The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly

eLife, 2015-02, Vol.4

2015

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Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes

Cell reports (Cambridge), 2014-09, Vol.8 (5), p.1365-1379

2014

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Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A

Genome research, 2015-08, Vol.25 (8), p.1196-1205

2015

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Ubiquitination of stalled ribosome triggers ribosome-associated quality control

Nature communications, 2017-07, Vol.8 (1), p.159-14, Article 159

2017

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Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets

Cell reports (Cambridge), 2016-09, Vol.17 (1), p.1-10

2016

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High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling

Science (American Association for the Advancement of Science), 2012-02, Vol.335 (6068), p.552-557

2012

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Genome-Wide Translational Profiling by Ribosome Footprinting

Methods in Enzymology, 2010, Vol.470, p.119-142

Ingolia, Nicholas T.

2010

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

Molecular cell, 2015-12, Vol.60 (5), p.816-827

2015

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

Nature protocols, 2012-08, Vol.7 (8), p.1534-1550

2012

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Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes

PLoS genetics, 2017-01, Vol.13 (1), p.e1006554-e1006554

2017

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The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA

Molecular cell, 2019-02, Vol.73 (4), p.738-748.e9

2019

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A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity

Cell, 2014-02, Vol.156 (4), p.800-811

2014

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The N-terminal domain of SARS-CoV-2 nsp1 plays key roles in suppression of cellular gene expression and preservation of viral gene expression

Cell reports (Cambridge), 2021-10, Vol.37 (3), p.109841-109841, Article 109841

2021

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Ribosomal protein RPL26 is the principal target of UFMylation

Proceedings of the National Academy of Sciences - PNAS, 2019-01, Vol.116 (4), p.1299-1308

2019

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Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9

Proceedings of the National Academy of Sciences - PNAS, 2016-03, Vol.113 (10), p.E1362-E1371

2016

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Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

Molecular systems biology, 2014-12, Vol.10 (12), p.770-n/a

2014

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Decoding Human Cytomegalovirus

Science (American Association for the Advancement of Science), 2012-11, Vol.338 (6110), p.1088-1093

2012

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Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function

PLoS genetics, 2021-04, Vol.17 (4), p.e1009521-e1009521

2021

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Ribosome Footprint Profiling of Translation throughout the Genome

Ribosome profiling: new views of translation, from single codons to genome scale

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins

The Growing Toolbox for Protein Synthesis Studies

Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures

The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly

Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes

Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A

Ubiquitination of stalled ribosome triggers ribosome-associated quality control

Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets

High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling

Genome-Wide Translational Profiling by Ribosome Footprinting

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes

The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA

A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity

The N-terminal domain of SARS-CoV-2 nsp1 plays key roles in suppression of cellular gene expression and preservation of viral gene expression

Ribosomal protein RPL26 is the principal target of UFMylation

Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

Decoding Human Cytomegalovirus

Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function

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