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The transcriptome signature analysis of the epithelial-mesenchymal transition and immune cell infiltration in colon adenocarcinoma

Scientific reports, 2023-10, Vol.13 (1), p.18383-18383, Article 18383

2023

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Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification

PloS one, 2023-08, Vol.18 (8), p.e0286044-e0286044

2023

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Senolysis by glutaminolysis inhibition ameliorates various age-associated disorders

Science (American Association for the Advancement of Science), 2021-01, Vol.371 (6526), p.265-270

2021

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PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis

BMC bioinformatics, 2022-08, Vol.23 (Suppl 8), p.1-342, Article 342

2022

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Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks

PloS one, 2022-05, Vol.17 (5), p.e0261630-e0261630

2022

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Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases

PloS one, 2023-08, Vol.18 (8), p.e0290307-e0290307

2023

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Analyzing integrated network of methylation and gene expression profiles in lung squamous cell carcinoma

Scientific reports, 2022-09, Vol.12 (1), p.15799-15799, Article 15799

2022

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Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification

Journal of computational biology, 2023-02, Vol.30 (2), p.223-243

2023

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A retrospective observational study analyzing work and study motivation based on the work environment of 15,677 Japanese clinicians in 2016

Scientific reports, 2022-08, Vol.12 (1), p.14806-14806, Article 14806

2022

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Predicting cell types with supervised contrastive learning on cells and their types

Scientific reports, 2024-01, Vol.14 (1), p.430-430, Article 430

2024

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Metagenomic profiling of gut microbiome in early chronic kidney disease

Nephrology, dialysis, transplantation, 2021-09, Vol.36 (9), p.1675-1684

2021

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Integrated exome and RNA sequencing of dedifferentiated liposarcoma

Nature communications, 2019-12, Vol.10 (1), p.5683-12, Article 5683

2019

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Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types

Genome research, 2020-03, Vol.30 (3), p.334-346

2020

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Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population

Gastroenterology (New York, N.Y. 1943), 2016-05, Vol.150 (5), p.1171-1182

2016

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Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification

Journal of computational biology, 2022-03, Vol.29 (3), p.257-275

2022

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Global gene network exploration based on explainable artificial intelligence approach

PloS one, 2020-11, Vol.15 (11), p.e0241508

2020

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Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis

Nature medicine, 2021-07, Vol.27 (7), p.1239-1249

2021

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Prognostic impact of circulating tumor DNA status post–allogeneic hematopoietic stem cell transplantation in AML and MDS

Blood, 2019-06, Vol.133 (25), p.2682-2695

2019

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Impact of salivary and pancreatic amylase gene copy numbers on diabetes, obesity, and functional profiles of microbiome in Northern Japanese population

Scientific reports, 2022-05, Vol.12 (1), p.7628-7628, Article 7628

2022

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Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation

Gastroenterology (New York, N.Y. 1943), 2021-05, Vol.160 (6), p.2089-2102.e12

2021

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Correction: Global gene network exploration based on explainable artificial intelligence approach

PloS one, 2021-01, Vol.16 (1), p.e0246380-e0246380

2021

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Role of Circulating Tumor DNA in Hematological Malignancy

Cancers, 2021-04, Vol.13 (9), p.2078

2021

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The detectability and removal efficiency of SARS-CoV-2 in a large-scale septic tank of a COVID-19 quarantine facility in Japan

The Science of the total environment, 2022-11, Vol.849, p.157869-157869, Article 157869

2022

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Circulating cell-free DNA in the peripheral blood plasma of patients is an informative biomarker for multiple myeloma relapse

International journal of clinical oncology, 2021-11, Vol.26 (11), p.2142-2150

2021

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A Bayesian model integration for mutation calling through data partitioning

Bioinformatics, 2019-11, Vol.35 (21), p.4247-4254

2019

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The transcriptome signature analysis of the epithelial-mesenchymal transition and immune cell infiltration in colon adenocarcinoma

Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification

Senolysis by glutaminolysis inhibition ameliorates various age-associated disorders

PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis

Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks

Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases

Analyzing integrated network of methylation and gene expression profiles in lung squamous cell carcinoma

Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification

A retrospective observational study analyzing work and study motivation based on the work environment of 15,677 Japanese clinicians in 2016

Predicting cell types with supervised contrastive learning on cells and their types

Metagenomic profiling of gut microbiome in early chronic kidney disease

Integrated exome and RNA sequencing of dedifferentiated liposarcoma

Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types

Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population

Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification

Global gene network exploration based on explainable artificial intelligence approach

Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis

Prognostic impact of circulating tumor DNA status post–allogeneic hematopoietic stem cell transplantation in AML and MDS

Impact of salivary and pancreatic amylase gene copy numbers on diabetes, obesity, and functional profiles of microbiome in Northern Japanese population

Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation

Correction: Global gene network exploration based on explainable artificial intelligence approach

Role of Circulating Tumor DNA in Hematological Malignancy

The detectability and removal efficiency of SARS-CoV-2 in a large-scale septic tank of a COVID-19 quarantine facility in Japan

Circulating cell-free DNA in the peripheral blood plasma of patients is an informative biomarker for multiple myeloma relapse

A Bayesian model integration for mutation calling through data partitioning

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