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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

Nature methods, 2010-06, Vol.7 (6), p.455-457

2010

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The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader

PloS one, 2010-03, Vol.5 (3), p.e9729

2010

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Medusa: a simple tool for interaction graph analysis

Bioinformatics, 2005-12, Vol.21 (24), p.4432-4433

2005

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Genome-wide Profiling of Genetic Synthetic Lethality Identifies CDK12 as a Novel Determinant of PARP1/2 Inhibitor Sensitivity

Cancer research (Chicago, Ill.), 2014-01, Vol.74 (1), p.287-297

2014

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Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes

PloS one, 2011-05, Vol.6 (5), p.e20237-e20237

2011

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

Nucleic acids research, 2005-01, Vol.33 (Database issue), p.D433-D437

2005

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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

PloS one, 2009-11, Vol.4 (11), p.e7979-e7979

2009

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Genomic characterization of methanomicrobiales reveals three classes of methanogens

PloS one, 2009-06, Vol.4 (6), p.e5797-e5797

2009

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Microbial co-habitation and lateral gene transfer: what transposases can tell us

Genome biology, 2009-04, Vol.10 (4), p.R45-R45, Article R45

2009

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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii

PloS one, 2009-01, Vol.4 (1), p.e4192-e4192

2009

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Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

BMC genomics, 2013-03, Vol.14 (1), p.165-165, Article 165

2013

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Medusa: A tool for exploring and clustering biological networks

BMC research notes, 2011-10, Vol.4 (1), p.384-384, Article 384

2011

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Focus: Synergistetes

Environmental microbiology, 2009-06, Vol.11 (6), p.1327-1329

2009

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Environments shape the nucleotide composition of genomes

EMBO reports, 2005-12, Vol.6 (12), p.1208-1213

2005

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Systematic association of genes to phenotypes by genome and literature mining

PLoS biology, 2005-05, Vol.3 (5), p.e134

2005

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Nature (London), 2009-12, Vol.462 (7276), p.1056-1060

2009

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Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

BMC medical genetics, 2012-12, Vol.13 (1), p.123-123, Article 123

2012

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Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing

PloS one, 2011-07, Vol.6 (7), p.e22250-e22250

2011

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A molecular study of microbe transfer between distant environments

PloS one, 2008-07, Vol.3 (7), p.e2607-e2607

2008

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Estimating DNA coverage and abundance in metagenomes using a gamma approximation

Bioinformatics, 2010-02, Vol.26 (3), p.295-301

2010

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Duplication is more common among laterally transferred genes than among indigenous genes

Genome biology, 2003-07, Vol.4 (8), p.R48-R48, Article R48

2003

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jClust: a clustering and visualization toolbox

Bioinformatics, 2009-08, Vol.25 (15), p.1994-1996

2009

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Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

American journal of hematology, 2012-07, Vol.87 (7), p.737-740

2012

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On the nature of gene innovation: duplication patterns in microbial genomes

Molecular biology and evolution, 2003-06, Vol.20 (6), p.945-954

2003

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OnTheFly: a tool for automated document-based text annotation, data linking and network generation

Bioinformatics, 2009-04, Vol.25 (7), p.977-978

2009

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader

Medusa: a simple tool for interaction graph analysis

Genome-wide Profiling of Genetic Synthetic Lethality Identifies CDK12 as a Novel Determinant of PARP1/2 Inhibitor Sensitivity

Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

Genomic characterization of methanomicrobiales reveals three classes of methanogens

Microbial co-habitation and lateral gene transfer: what transposases can tell us

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

Medusa: A tool for exploring and clustering biological networks

Focus: Synergistetes

Environments shape the nucleotide composition of genomes

Systematic association of genes to phenotypes by genome and literature mining

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing

A molecular study of microbe transfer between distant environments

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

Duplication is more common among laterally transferred genes than among indigenous genes

jClust: a clustering and visualization toolbox

Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

On the nature of gene innovation: duplication patterns in microbial genomes

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

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