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A systematic evaluation of single cell RNA-seq analysis pipelines

Nature communications, 2019-10, Vol.10 (1), p.4667-11, Article 4667

2019

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Comparative Analysis of Single-Cell RNA Sequencing Methods

Molecular cell, 2017-02, Vol.65 (4), p.631-643.e4

2017

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powsimR: power analysis for bulk and single cell RNA-seq experiments

Bioinformatics (Oxford, England), 2017-11, Vol.33 (21), p.3486-3488

2017

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Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq

Nature communications, 2018-07, Vol.9 (1), p.2937-8, Article 2937

2018

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Detecting recent selective sweeps while controlling for mutation rate and background selection

Molecular ecology, 2016-01, Vol.25 (1), p.142-156

2016

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

Nature genetics, 2007-04, Vol.39 (4), p.457-466

2007

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Recent and ongoing selection in the human genome

Nature reviews. Genetics, 2007-11, Vol.8 (11), p.857-868

2007

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Population genetic inference from genomic sequence variation

Genome research, 2010-03, Vol.20 (3), p.291-300

2010

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Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

Nature genetics, 2013-08, Vol.45 (8), p.884-890

2013

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Prime-seq, efficient and powerful bulk RNA sequencing

Genome Biology, 2022-03, Vol.23 (1), p.88-27, Article 88

2022

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The effect of background noise and its removal on the analysis of single-cell expression data

Genome Biology, 2023-06, Vol.24 (1), p.140-22, Article 140

2023

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The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency

PLoS genetics, 2021-05, Vol.17 (5), p.e1009587-e1009587

2021

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Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees

Science (American Association for the Advancement of Science), 2005-09, Vol.309 (5742), p.1850-1854

2005

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Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals

eLife, 2023-03, Vol.12

2023

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Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise

Nucleic acids research, 2017-03, Vol.45 (5), p.2438-2457

2017

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A neutral model of transcriptome evolution

PLoS biology, 2004-05, Vol.2 (5), p.E132-0682

2004

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Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome

PLoS genetics, 2011-10, Vol.7 (10), p.e1002326-e1002326

2011

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Darwinian and demographic forces affecting human protein coding genes

Genome Research, 2009-05, Vol.19 (5), p.838-849

2009

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Generation and characterization of inducible KRAB-dCas9 iPSCs from primates for cross-species CRISPRi

iScience, 2024-06, Vol.27 (6), p.110090, Article 110090

2024

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Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters

Epigenetics & chromatin, 2017-08, Vol.10 (1), p.39-39, Article 39

2017

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Adverse stem cell clones within a single patient's tumor predict clinical outcome in AML patients

Journal of hematology and oncology, 2022-03, Vol.15 (1), p.25-25, Article 25

2022

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Regional patterns of gene expression in human and chimpanzee brains

Genome research, 2004-08, Vol.14 (8), p.1462-1473

2004

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Why do human diversity levels vary at a megabase scale?

Genome research, 2005-09, Vol.15 (9), p.1222-1231

2005

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The impact of amplification on differential expression analyses by RNA-seq

Scientific reports, 2016-05, Vol.6 (1), p.25533-25533, Article 25533

2016

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A systematic evaluation of single cell RNA-seq analysis pipelines

Comparative Analysis of Single-Cell RNA Sequencing Methods

powsimR: power analysis for bulk and single cell RNA-seq experiments

Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq

Detecting recent selective sweeps while controlling for mutation rate and background selection

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

Recent and ongoing selection in the human genome

Population genetic inference from genomic sequence variation

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

Prime-seq, efficient and powerful bulk RNA sequencing

The effect of background noise and its removal on the analysis of single-cell expression data

The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency

Evolution of Cytogenetically Normal Acute Myeloid Leukemia During Therapy and Relapse: An Exome Sequencing Study of 50 Patients

Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees

Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals

Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise

A neutral model of transcriptome evolution

Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome

Darwinian and demographic forces affecting human protein coding genes

Generation and characterization of inducible KRAB-dCas9 iPSCs from primates for cross-species CRISPRi

Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters

Adverse stem cell clones within a single patient's tumor predict clinical outcome in AML patients

Regional patterns of gene expression in human and chimpanzee brains

Why do human diversity levels vary at a megabase scale?

The impact of amplification on differential expression analyses by RNA-seq

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