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An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

Genome Biology, 2018-01, Vol.19 (1), p.7-7, Article 7

2018

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Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3

Nucleic acids research, 2020-05, Vol.48 (9), p.4756-4768

2020

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MBD3 localizes at promoters, gene bodies and enhancers of active genes

PLoS genetics, 2013-12, Vol.9 (12), p.e1004028

2013

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Interaction of the pioneer transcription factor GATA3 with nucleosomes

Nature communications, 2020-08, Vol.11 (1), p.4136-10, Article 4136

2020

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Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms

Nature communications, 2020-07, Vol.11 (1), p.3355-14, Article 3355

2020

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Alterations in promoter interaction landscape and transcriptional network underlying metabolic adaptation to diet

Nature communications, 2020-02, Vol.11 (1), p.962-16, Article 962

2020

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CD11b+ lung dendritic cells at different stages of maturation induce Th17 or Th2 differentiation

Nature communications, 2021-08, Vol.12 (1), p.5029-16, Article 5029

2021

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MapSplice: accurate mapping of RNA-seq reads for splice junction discovery

Nucleic acids research, 2010-10, Vol.38 (18), p.e178-e178

2010

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GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network

Nature communications, 2018-03, Vol.9 (1), p.1059-14, Article 1059

2018

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RUNX1 maintains the identity of the fetal ovary through an interplay with FOXL2

Nature communications, 2019-11, Vol.10 (1), p.5116-14, Article 5116

2019

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Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation

Proceedings of the National Academy of Sciences - PNAS, 2020-08, Vol.117 (31), p.18439-18447

2020

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DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation

Nature communications, 2021-05, Vol.12 (1), p.2490-2490, Article 2490

2021

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GLIS3 binds pancreatic beta cell regulatory regions alongside other islet transcription factors

Journal of endocrinology, 2019-10, Vol.243 (1), p.1-14

2019

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GATA3 in Breast Cancer: Tumor Suppressor or Oncogene?

Gene expression, 2015-01, Vol.16 (4), p.163-168

2015

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The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

PLoS genetics, 2016-10, Vol.12 (10), p.e1006385

2016

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Transcriptome and DNA Methylome Analysis in a Mouse Model of Diet-Induced Obesity Predicts Increased Risk of Colorectal Cancer

Cell reports (Cambridge), 2018-01, Vol.22 (3), p.624-637

2018

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DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation

Genome research, 2013-12, Vol.23 (12), p.2030-2041

2013

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GLIS1 regulates trabecular meshwork function and intraocular pressure and is associated with glaucoma in humans

Nature communications, 2021-08, Vol.12 (1), p.4877-15, Article 4877

2021

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Obesity, Rather Than Diet, Drives Epigenomic Alterations in Colonic Epithelium Resembling Cancer Progression

Cell metabolism, 2014-04, Vol.19 (4), p.702-711

2014

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GLIS3 regulates transcription of thyroid hormone biosynthetic genes in coordination with other thyroid transcription factors

Cell & bioscience, 2023-02, Vol.13 (1), p.32-32, Article 32

2023

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Breast tumor specific mutation in GATA3 affects physiological mechanisms regulating transcription factor turnover

BMC cancer, 2014-04, Vol.14 (1), p.278-278, Article 278

2014

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Muver, a computational framework for accurately calling accumulated mutations

BMC genomics, 2018-05, Vol.19 (1), p.345-19, Article 345

2018

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A simple and robust method for simultaneous dual-omics profiling with limited numbers of cells

Cell reports methods, 2021-07, Vol.1 (3), p.100041, Article 100041

2021

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DNASE1L3 enhances antitumor immunity and suppresses tumor progression in colon cancer

JCI insight, 2023-09, Vol.8 (17)

2023

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An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

Nature genetics, 2013-09, Vol.45 (9), p.970-976

2013

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An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3

MBD3 localizes at promoters, gene bodies and enhancers of active genes

Interaction of the pioneer transcription factor GATA3 with nucleosomes

Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms

Alterations in promoter interaction landscape and transcriptional network underlying metabolic adaptation to diet

CD11b+ lung dendritic cells at different stages of maturation induce Th17 or Th2 differentiation

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery

GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network

RUNX1 maintains the identity of the fetal ovary through an interplay with FOXL2

Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation

DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation

GLIS3 binds pancreatic beta cell regulatory regions alongside other islet transcription factors

GATA3 in Breast Cancer: Tumor Suppressor or Oncogene?

The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

Transcriptome and DNA Methylome Analysis in a Mouse Model of Diet-Induced Obesity Predicts Increased Risk of Colorectal Cancer

DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation

GLIS1 regulates trabecular meshwork function and intraocular pressure and is associated with glaucoma in humans

Obesity, Rather Than Diet, Drives Epigenomic Alterations in Colonic Epithelium Resembling Cancer Progression

GLIS3 regulates transcription of thyroid hormone biosynthetic genes in coordination with other thyroid transcription factors

Breast tumor specific mutation in GATA3 affects physiological mechanisms regulating transcription factor turnover

Muver, a computational framework for accurately calling accumulated mutations

A simple and robust method for simultaneous dual-omics profiling with limited numbers of cells

DNASE1L3 enhances antitumor immunity and suppresses tumor progression in colon cancer

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

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