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Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models

Metabolic engineering, 2018-05, Vol.47 (C), p.190-199

2018

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From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007319-e1007319

2019

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K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data

Metabolic engineering, 2020-09, Vol.61 (C), p.197-205

2020

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Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations

Metabolites, 2015-09, Vol.5 (3), p.521-535

2015

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Redistribution of metabolic fluxes in Chlorella protothecoides by variation of media nitrogen concentration

Metabolic engineering communications, 2015-12, Vol.2, p.124-131

2015

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Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis

Biotechnology for biofuels, 2017-11, Vol.10 (1), Article 273

2017

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13C metabolic flux analysis at a genome-scale

Metabolic engineering, 2015-11, Vol.32 (C), p.12-22

2015

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K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data

Metabolic engineering, 2020-09, Vol.61 (C)

2020

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Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models

Metabolic engineering, 2018-05, Vol.47 (C)

2018

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Multi-omic characterization of antibody-producing CHO cell lines elucidates metabolic reprogramming and nutrient uptake bottlenecks

Metabolic engineering, 2024-09, Vol.85, p.94-104

2024

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From Escherichia coli mutant .sup.13C labeling data to a core kinetic model: A kinetic model parameterization pipeline

PLoS computational biology, 2019-09, Vol.15 (9)

2019

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Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13C-Labeling Data1[OPEN]

Plant physiology (Bethesda), 2018-12, Vol.179 (2), p.761-769

2018

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Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13 C-Labeling Data

Plant physiology (Bethesda), 2018-12, Vol.179 (2)

2018

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Guidelines for extracting biologically relevant context-specific metabolic models using gene expression data

Metabolic engineering, 2023-01, Vol.75, p.181-191

2023

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Assessing the impact of substrate-level enzyme regulations limiting ethanol titer in Clostridium thermocellum using a core kinetic model

Metabolic engineering, 2022-01, Vol.69 (C), p.286-301

2022

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COSMIC-dFBA: A novel multi-scale hybrid framework for bioprocess modeling

Metabolic engineering, 2024-03, Vol.82, p.183-192

2024

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Reversing methanogenesis to capture methane for liquid biofuel precursors

Microbial cell factories, 2016-01, Vol.15 (1), p.11-11, Article 11

2016

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Nonlinear Optimization Techniques for Genome-Scale Flux Elucidation and Kinetic Parameterization

Gopalakrishnan, Saratram

2019

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Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13 C-Labeling Data

Plant physiology (Bethesda), 2019-02, Vol.179 (2), p.761-769

2019

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Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

Microbial cell factories, 2016-01, Vol.15 (10), p.10-10, Article 10

2016

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Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives

Current opinion in chemical engineering, 2020-07, Vol.30 (C)

2020

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Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives

Current opinion in chemical engineering, 2020-12, Vol.30 (C), p.17-25

2020

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Methane oxidation by anaerobic archaea for conversion to liquid fuels

Journal of industrial microbiology & biotechnology, 2015-03, Vol.42 (3), p.391-401

2015

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Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

Microbial cell factories, 2016-01, Vol.15 (1)

2016

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Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13C-Labeling Data

Plant physiology (Bethesda), 2019-02, Vol.179 (2), p.761-769

2019

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Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models

From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline

K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data

Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations

Redistribution of metabolic fluxes in Chlorella protothecoides by variation of media nitrogen concentration

Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis

13C metabolic flux analysis at a genome-scale

K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data

Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models

Multi-omic characterization of antibody-producing CHO cell lines elucidates metabolic reprogramming and nutrient uptake bottlenecks

From Escherichia coli mutant .sup.13C labeling data to a core kinetic model: A kinetic model parameterization pipeline

Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13C-Labeling Data1[OPEN]

Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13 C-Labeling Data

Guidelines for extracting biologically relevant context-specific metabolic models using gene expression data

Assessing the impact of substrate-level enzyme regulations limiting ethanol titer in Clostridium thermocellum using a core kinetic model

COSMIC-dFBA: A novel multi-scale hybrid framework for bioprocess modeling

Reversing methanogenesis to capture methane for liquid biofuel precursors

Nonlinear Optimization Techniques for Genome-Scale Flux Elucidation and Kinetic Parameterization

Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13 C-Labeling Data

Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives

Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives

Methane oxidation by anaerobic archaea for conversion to liquid fuels

Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

Genome-Scale Fluxome of Synechococcus elongatus UTEX 2973 Using Transient 13C-Labeling Data

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