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MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

Nucleic acids research, 2016-07, Vol.44 (W1), p.W494-W501

2016

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Finding driver mutations in cancer: Elucidating the role of background mutational processes

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006981

2019

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From sequence to function through structure: Deep learning for protein design

Computational and structural biotechnology journal, 2023-01, Vol.21, p.238-250

2023

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MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

iScience, 2020-03, Vol.23 (3), p.100939-100939, Article 100939

2020

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Simple yet functional phosphate-loop proteins

Proceedings of the National Academy of Sciences - PNAS, 2018-12, Vol.115 (51), p.E11943-E11950

2018

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Exploring background mutational processes to decipher cancer genetic heterogeneity

Nucleic acids research, 2017-07, Vol.45 (W1), p.W514-W522

2017

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Protein function from its emergence to diversity in contemporary proteins

Physical biology, 2015-06, Vol.12 (4), p.045002-045002

2015

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Computational Approaches to Prioritize Cancer Driver Missense Mutations

International journal of molecular sciences, 2018-07, Vol.19 (7), p.2113

2018

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APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

Cell reports (Cambridge), 2019-03, Vol.26 (10), p.2651-2666.e6

2019

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Back in time to the Gly-rich prototype of the phosphate binding elementary function

Current research in structural biology, 2024-01, Vol.7, p.100142-100142, Article 100142

2024

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Mutational signatures and mutable motifs in cancer genomes

Briefings in bioinformatics, 2017-05, Vol.19 (6), p.1085-1101

2017

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A Dominant Negative Heterozygous G87R Mutation in the Zinc Transporter, ZnT-2 (SLC30A2), Results in Transient Neonatal Zinc Deficiency

The Journal of biological chemistry, 2012-08, Vol.287 (35), p.29348-29361

2012

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Prototypes of elementary functional loops unravel evolutionary connections between protein functions

Bioinformatics, 2010-09, Vol.26 (18), p.i497-i503

2010

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Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

Structure (London), 2010-07, Vol.18 (7), p.819-828

2010

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The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins

Biology direct, 2014-12, Vol.9 (1), p.29-29, Article 29

2014

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MethylToSNP: identifying SNPs in Illumina DNA methylation array data

Epigenetics & chromatin, 2019-12, Vol.12 (1), p.79-79, Article 79

2019

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DNA methylation profiles unique to Kalahari KhoeSan individuals

Epigenetics, 2021-05, Vol.16 (5), p.537-553

2021

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Exploring the evolution of protein function in Archaea

BMC evolutionary biology, 2012-05, Vol.12 (1), p.75

2012

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Data sets on human histone interaction networks

Data in brief, 2020-12, Vol.33, p.106555-106555, Article 106555

2020

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Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012

BMC bioinformatics, 2012-12, Vol.13 (Suppl 18), p.A1-A1, Article A1

2012

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Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

Journal of molecular biology, 2016-01, Vol.428 (1), p.221-237

2016

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Nucleotide binding database NBDB--a collection of sequence motifs with specific protein-ligand interactions

Nucleic acids research, 2016-01, Vol.44 (D1), p.D301-D307

2016

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SPACER: Server for predicting allosteric communication and effects of regulation

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W266-W272

2013

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Molecular recognition of nucleosomes by binding partners

Current opinion in structural biology, 2019-06, Vol.56, p.164-170

2019

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Human Histone Interaction Networks: An Old Concept, New Trends

Journal of molecular biology, 2021-03, Vol.433 (6), p.166684-166684, Article 166684

2021

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MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

Finding driver mutations in cancer: Elucidating the role of background mutational processes

From sequence to function through structure: Deep learning for protein design

MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

Simple yet functional phosphate-loop proteins

Exploring background mutational processes to decipher cancer genetic heterogeneity

Protein function from its emergence to diversity in contemporary proteins

Computational Approaches to Prioritize Cancer Driver Missense Mutations

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

Back in time to the Gly-rich prototype of the phosphate binding elementary function

Mutational signatures and mutable motifs in cancer genomes

A Dominant Negative Heterozygous G87R Mutation in the Zinc Transporter, ZnT-2 (SLC30A2), Results in Transient Neonatal Zinc Deficiency

Prototypes of elementary functional loops unravel evolutionary connections between protein functions

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

DNA methylation profiles unique to Kalahari KhoeSan individuals

Exploring the evolution of protein function in Archaea

Data sets on human histone interaction networks

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

Nucleotide binding database NBDB--a collection of sequence motifs with specific protein-ligand interactions

SPACER: Server for predicting allosteric communication and effects of regulation

Molecular recognition of nucleosomes by binding partners

Human Histone Interaction Networks: An Old Concept, New Trends

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