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Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses

Molecular systems biology, 2021-01, Vol.17 (1), p.e9730-n/a

2021

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Magnetique: an interactive web application to explore transcriptome signatures of heart failure

Journal of translational medicine, 2022-11, Vol.20 (1), p.513-513, Article 513

2022

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Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data

Molecular systems biology, 2019-08, Vol.15 (8), p.e8828-n/a

2019

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A machine learning and directed network optimization approach to uncover TP53 regulatory patterns

iScience, 2023-12, Vol.26 (12), p.108291-108291, Article 108291

2023

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Authentication of Primary Murine Cell Lines by a Microfluidics-Based Lab-On-Chip System

Biomedicines, 2020-12, Vol.8 (12), p.590

2020

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Characterizing alternative splicing effects on protein interaction networks with LINDA

Bioinformatics (Oxford, England), 2023-06, Vol.39 (Supplement_1), p.i458-i464

2023

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From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL

NPJ systems biology and applications, 2019-11, Vol.5 (1), p.40-10, Article 40

2019

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PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data

Journal of proteome research, 2021-04, Vol.20 (4), p.2138-2144

2021

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Converting networks to predictive logic models from perturbation signalling data with CellNOpt

Bioinformatics, 2020-08, Vol.36 (16), p.4523-4524

2020

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Adaptive sampling for nanopore direct RNA-sequencing

RNA (Cambridge), 2023-12, Vol.29 (12), p.1939-1949

2023

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Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms

Database : the journal of biological databases and curation, 2024-07, Vol.2024

2024

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Treatment with ribociclib shows favourable immunomodulatory effects in patients with hormone receptor-positive breast cancer—findings from the RIBECCA trial

European journal of cancer (1990), 2022-02, Vol.162, p.45-55

2022

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Systems approach reveals distinct and shared signaling networks of the four PGE 2 receptors in T cells

Science signaling, 2021-10, Vol.14 (703), p.eabc8579

2021

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Prostaglandin E 2 signaling networks in T cells revealed through a systems approach

The FASEB journal, 2019-04, Vol.33 (S1)

2019

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Prostaglandin E2 signaling networks in T cells revealed through a systems approach

The FASEB journal, 2019-04, Vol.33 (S1), p.lb258-lb258

2019

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Abstract B76: Pyruvate dehydrogenase: A key to epigenetic regulation in CAFs

Clinical cancer research, 2020-07, Vol.26 (13_Supplement), p.B76-B76

2020

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Literature and data-driven based inference of signalling interactions using time-course data

IFAC-PapersOnLine, 2019, Vol.52 (26), p.52-57

2019

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Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses

Magnetique: an interactive web application to explore transcriptome signatures of heart failure

Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix

Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data

A machine learning and directed network optimization approach to uncover TP53 regulatory patterns

Authentication of Primary Murine Cell Lines by a Microfluidics-Based Lab-On-Chip System

Characterizing alternative splicing effects on protein interaction networks with LINDA

From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL

PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data

Converting networks to predictive logic models from perturbation signalling data with CellNOpt

Adaptive sampling for nanopore direct RNA-sequencing

Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms

Treatment with ribociclib shows favourable immunomodulatory effects in patients with hormone receptor-positive breast cancer—findings from the RIBECCA trial

Systems approach reveals distinct and shared signaling networks of the four PGE 2 receptors in T cells

Prostaglandin E 2 signaling networks in T cells revealed through a systems approach

Prostaglandin E2 signaling networks in T cells revealed through a systems approach

Abstract B76: Pyruvate dehydrogenase: A key to epigenetic regulation in CAFs

Author Correction: Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix

Literature and data-driven based inference of signalling interactions using time-course data

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