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Wavelet Monte Carlo: a principle for sampling from complex distributions

Statistics and computing, 2023-10, Vol.33 (5), Article 92

2023

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Following a moving target-Monte Carlo inference for dynamic Bayesian models

Journal of the Royal Statistical Society. Series B, Statistical methodology, 2001, Vol.63 (1), p.127-146

2001

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Highly conserved non-coding sequences are associated with vertebrate development

PLoS biology, 2005-01, Vol.3 (1), p.e7-e7

2005

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A novel algorithm and web-based tool for comparing two alternative phylogenetic trees

Bioinformatics, 2006-01, Vol.22 (1), p.117-119

2006

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Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

Genome biology, 2007-02, Vol.8 (2), p.R15-R15, Article R15

2007

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A statistical method for analysing cospeciation in tritrophic ecology using electrical circuit theory

Statistical applications in genetics and molecular biology, 2017-11, Vol.16 (5), p.313-331

2017

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A Permutation Test of Host-Parasite Cospeciation

Molecular biology and evolution, 2009-07, Vol.26 (7), p.1457-1468

2009

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Modeling the percolation of annotation errors in a database of protein sequences

Bioinformatics (Oxford, England), 2002-12, Vol.18 (12), p.1641-1649

2002

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Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key

Trends in genetics, 2006, Vol.22 (1), p.5-10

2006

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Statistical analysis of domains in interacting protein pairs

Bioinformatics, 2005-04, Vol.21 (7), p.993-1001

2005

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Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test

BMC bioinformatics, 2005-04, Vol.6 (1), p.109-109, Article 109

2005

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Adaptive Markov Chain Monte Carlo through Regeneration

Journal of the American Statistical Association, 1998-09, Vol.93 (443), p.1045-1054

1998

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Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences

Trends in genetics, 2005-08, Vol.21 (8), p.436-440

2005

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Probabilistic annotation of protein sequences based on functional classifications

BMC bioinformatics, 2005-12, Vol.6 (1), p.302-302, Article 302

2005

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Percolation of annotation errors through hierarchically structured protein sequence databases

Mathematical biosciences, 2005-02, Vol.193 (2), p.223-234

2005

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Dynamic Conditional Independence Models and Markov Chain Monte Carlo Methods

Journal of the American Statistical Association, 1997-12, Vol.92 (440), p.1403-1412

1997

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A Non-Parametric Method for Detecting Specificity Determining Sites in Protein Sequence Alignments

Statistical applications in genetics and molecular biology, 2011-04, Vol.10 (1), p.1-31

2011

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A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction

Statistical applications in genetics and molecular biology, 2011-03, Vol.10 (1), p.1574-1574

2011

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Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes

Briefings in bioinformatics, 2006-03, Vol.7 (1), p.48-54

2006

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Permutation tests for analyzing cospeciation in multiple phylogenies: applications in tri-trophic ecology

Statistical applications in genetics and molecular biology, 2013-12, Vol.12 (6), p.679-701

2013

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Log-Linear Modelling of Protein Dipeptide Structure Reveals Interesting Patterns of Side-Chain-Backbone Interactions

Statistical applications in genetics and molecular biology, 2011-01, Vol.10 (1), p.1-27

2011

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Quality determination and the repair of poor quality spots in array experiments

BMC bioinformatics, 2005-09, Vol.6 (1), p.234-234, Article 234

2005

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Fusing microarray experiments with multivariate regression

Bioinformatics, 2005-09, Vol.21 (suppl-2), p.ii137-ii143

2005

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A Bayesian Approach to Measurement Error Problems in Epidemiology Using Conditional Independence Models

American journal of epidemiology, 1993-09, Vol.138 (6), p.430-442

1993

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Conservation of unique cell-surface CD antigen mosaics in HIV-1–infected individuals

Blood, 2005-08, Vol.106 (3), p.1003-1007

2005

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Wavelet Monte Carlo: a principle for sampling from complex distributions

Following a moving target-Monte Carlo inference for dynamic Bayesian models

Highly conserved non-coding sequences are associated with vertebrate development

A novel algorithm and web-based tool for comparing two alternative phylogenetic trees

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

A statistical method for analysing cospeciation in tritrophic ecology using electrical circuit theory

A Permutation Test of Host-Parasite Cospeciation

Modeling the percolation of annotation errors in a database of protein sequences

Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key

Statistical analysis of domains in interacting protein pairs

Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test

Adaptive Markov Chain Monte Carlo through Regeneration

Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences

Probabilistic annotation of protein sequences based on functional classifications

Percolation of annotation errors through hierarchically structured protein sequence databases

Dynamic Conditional Independence Models and Markov Chain Monte Carlo Methods

A Non-Parametric Method for Detecting Specificity Determining Sites in Protein Sequence Alignments

A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction

Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes

Permutation tests for analyzing cospeciation in multiple phylogenies: applications in tri-trophic ecology

Log-Linear Modelling of Protein Dipeptide Structure Reveals Interesting Patterns of Side-Chain-Backbone Interactions

Quality determination and the repair of poor quality spots in array experiments

Fusing microarray experiments with multivariate regression

A Bayesian Approach to Measurement Error Problems in Epidemiology Using Conditional Independence Models

Conservation of unique cell-surface CD antigen mosaics in HIV-1–infected individuals

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