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srnaMapper: an optimal mapping tool for sRNA-Seq reads

BMC bioinformatics, 2022-11, Vol.23 (1), p.1-495, Article 495

2022

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mmannot: How to improve small-RNA annotation?

PloS one, 2020-05, Vol.15 (5), p.e0231738-e0231738

2020

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Structural and functional partitioning of bread wheat chromosome 3B

Science (American Association for the Advancement of Science), 2014-07, Vol.345 (6194), p.287-287

2014

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Oak genome reveals facets of long lifespan

Nature plants, 2018-07, Vol.4 (7), p.440-452

2018

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Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing

PloS one, 2022-09, Vol.17 (9), p.e0273253-e0273253

2022

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Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

Genes & development, 2007-06, Vol.21 (11), p.1353-1366

2007

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Asterics: a simple tool for the ExploRation and Integration of omiCS data

BMC bioinformatics, 2023-10, Vol.24 (1), p.1-391, Article 391

2023

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A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

Nucleic acids research, 2009-11, Vol.37 (21), p.7239-7257

2009

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Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions

PloS one, 2010-05, Vol.5 (5), p.e10725-e10725

2010

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MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring

Genes, 2023-03, Vol.14 (3), p.664

2023

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Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Molecular ecology resources, 2016-01, Vol.16 (1), p.254-265

2016

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Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria ( Mollicutes )

Frontiers in microbiology, 2019-11, Vol.10, p.2701

2019

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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

BMC genomics, 2017-11, Vol.18 (1), p.882-882, Article 882

2017

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RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

BMC genomics, 2008-10, Vol.9 (1), p.470-470, Article 470

2008

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Phylodynamic study of the conserved RNA structure encompassing the hemagglutinin cleavage site encoding region of H5 and H7 low pathogenic avian influenza viruses

Virus evolution, 2021-11, Vol.7 (2), p.veab093-veab093

2021

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Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

mSystems, 2017-03, Vol.2 (2), p.e00186-16

2017

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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Scientific data, 2023-06, Vol.10 (1), p.369-369, Article 369

2023

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Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function

BMC plant biology, 2010-12, Vol.10 (1), p.283-283

2010

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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

PloS one, 2015-09, Vol.10 (9), p.e0139075-e0139075

2015

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Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001

Genome announcements (Washington, DC), 2017-08, Vol.5 (32)

2017

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Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

BMC genomics, 2011-06, Vol.12 (1), p.312-312, Article 312

2011

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RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA

RNA (Cambridge), 2011-11, Vol.17 (11), p.1947-1956

2011

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LeARN: a platform for detecting, clustering and annotating non-coding RNAs

BMC bioinformatics, 2008-01, Vol.9 (1), p.21-21, Article 21

2008

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Two different mechanisms for tRNA ribose methylation in Archaea: a short survey

Biochimie, 2005-09, Vol.87 (9), p.889-895

2005

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The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP

RNA (Cambridge), 2005-07, Vol.11 (7), p.1051-1063

2005

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srnaMapper: an optimal mapping tool for sRNA-Seq reads

mmannot: How to improve small-RNA annotation?

Structural and functional partitioning of bread wheat chromosome 3B

Oak genome reveals facets of long lifespan

Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing

Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

Asterics: a simple tool for the ExploRation and Integration of omiCS data

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions

MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria ( Mollicutes )

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

Phylodynamic study of the conserved RNA structure encompassing the hemagglutinin cleavage site encoding region of H5 and H7 low pathogenic avian influenza viruses

Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA

LeARN: a platform for detecting, clustering and annotating non-coding RNAs

Two different mechanisms for tRNA ribose methylation in Archaea: a short survey

The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP

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