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Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps

PLoS genetics, 2015-02, Vol.11 (2), p.e1005004-e1005004

2015

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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

PLoS biology, 2019-01, Vol.17 (1), p.e3000102-e3000102

2019

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Understanding soft sweeps: a signature of rapid adaptation

Nature reviews. Genetics, 2023-07, Vol.24 (7), p.420-420

Garud, Nandita R.

2023

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Population Genetics in the Human Microbiome

Trends in genetics, 2020-01, Vol.36 (1), p.53-67

2020

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Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data

PLoS genetics, 2021-02, Vol.17 (2), p.e1009373-e1009373

2021

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An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Genome research, 2016-11, Vol.26 (11), p.1612-1625

2016

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Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster

Molecular biology and evolution, 2023-01, Vol.40 (1)

2023

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The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome

mSystems, 2021-08, Vol.6 (4), p.e0077921-e0077921

Garud, Nandita

2021

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Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity

Genetics (Austin), 2018-12, Vol.210 (4), p.1429-1452

2018

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The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome

mSystems, 2021-08, Vol.6 (4)

Garud, Nandita

2021

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SNV-FEAST: microbial source tracking with single nucleotide variants

Genome Biology, 2023-04, Vol.24 (1), p.101-101, Article 101

2023

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Evaluating supervised and unsupervised background noise correction in human gut microbiome data

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009838-e1009838

2022

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Rapid evolution and strain turnover in the infant gut microbiome

Genome research, 2022-06, Vol.32 (6), p.1124-1136

2022

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Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome

mBio, 2023-04, Vol.14 (2), p.e0250222

2023

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Comparative Population Genetics in the Human Gut Microbiome

Genome biology and evolution, 2022-01, Vol.14 (1)

2022

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Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Genome research, 2021-08, Vol.31 (8), p.1433-1446

2021

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Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome

eLife, 2023-02, Vol.12

2023

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Elevated Linkage Disequilibrium and Signatures of Soft Sweeps Are Common in Drosophila melanogaster

Genetics (Austin), 2016-06, Vol.203 (2), p.863-880

2016

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Molecular evidence for a single evolutionary origin of domesticated rice

Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (20), p.8351-8356

2011

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Microbial Evolution: An overlooked biomarker of host diet

Cell host & microbe, 2022-02, Vol.30 (2), p.146-147

Garud, Nandita

2022

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Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps

Theoretical population biology, 2015-06, Vol.102, p.94-101

2015

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Structural Variants and Selective Sweep Foci Contribute to Insecticide Resistance in the Drosophila Genetic Reference Panel

G3 : genes - genomes - genetics, 2018-11, Vol.8 (11), p.3489-3497

2018

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The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Molecular ecology, 2016-01, Vol.25 (1), p.42-66

2016

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Specific Oral Microbial Differences in Proteobacteria and Bacteroidetes Are Associated with Distinct Sites When Moving from Healthy Mucosa to Oral Dysplasia-A Microbiome and Gene Profiling Study and Focused Review

Microorganisms (Basel), 2023-09, Vol.11 (9), p.2250

2023

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Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population

Molecular ecology, 2014-01, Vol.23 (1), p.136-150

2014

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Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

Understanding soft sweeps: a signature of rapid adaptation

Population Genetics in the Human Microbiome

Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster

The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome

Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity

The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome

SNV-FEAST: microbial source tracking with single nucleotide variants

Evaluating supervised and unsupervised background noise correction in human gut microbiome data

Rapid evolution and strain turnover in the infant gut microbiome

Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome

Comparative Population Genetics in the Human Gut Microbiome

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome

Elevated Linkage Disequilibrium and Signatures of Soft Sweeps Are Common in Drosophila melanogaster

Molecular evidence for a single evolutionary origin of domesticated rice

Microbial Evolution: An overlooked biomarker of host diet

Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps

Structural Variants and Selective Sweep Foci Contribute to Insecticide Resistance in the Drosophila Genetic Reference Panel

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Specific Oral Microbial Differences in Proteobacteria and Bacteroidetes Are Associated with Distinct Sites When Moving from Healthy Mucosa to Oral Dysplasia-A Microbiome and Gene Profiling Study and Focused Review

Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population

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