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Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation

ACS synthetic biology, 2019-07, Vol.8 (7), p.1474-1477

2019

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Accurate phylogenetic classification of variable-length DNA fragments

Nature methods, 2007-01, Vol.4 (1), p.63-72

2007

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

Nature biotechnology, 2006-10, Vol.24 (10), p.1263-1269

2006

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ClusterCAD: a computational platform for type I modular polyketide synthase design

Nucleic acids research, 2018-01, Vol.46 (D1), p.D509

2018

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Synthetic and systems biology for microbial production of commodity chemicals

NPJ systems biology and applications, 2016-04, Vol.2 (1), p.16009, Article 16009

2016

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On the Origin and Robustness of Power-Law Species-Area Relationships in Ecology

Proceedings of the National Academy of Sciences - PNAS, 2006-07, Vol.103 (27), p.10310-10315

2006

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A Method to Constrain Genome-Scale Models with 13C Labeling Data

PLoS computational biology, 2015-09, Vol.11 (9), p.e1004363-e1004363

2015

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Automated “Cells-To-Peptides” Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes

Journal of proteome research, 2019-10, Vol.18 (10), p.3752-3761

2019

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The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

BMC bioinformatics, 2017-04, Vol.18 (1), p.205-205, Article 205

2017

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Common principles and best practices for engineering microbiomes

Nature reviews. Microbiology, 2019-12, Vol.17 (12), p.725-741

2019

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Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases

Journal of industrial microbiology & biotechnology, 2019-08, Vol.46 (8), p.1225-1235

2019

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Flux Analysis of Central Metabolic Pathways in Geobacter metallireducens during Reduction of Soluble Fe(III)-Nitrilotriacetic Acid

Applied and Environmental Microbiology, 2007-06, Vol.73 (12), p.3859-3864

2007

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Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

BMC bioinformatics, 2017-04, Vol.18 (1), p.219-219, Article 219

2017

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Microbial Synthesis of Pinene

ACS synthetic biology, 2014-07, Vol.3 (7), p.466-475

2014

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Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein

Biotechnology progress, 2010-01, Vol.26 (1), p.52-56

2010

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Flux-Enabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism

Frontiers in bioengineering and biotechnology, 2017-05, Vol.5, p.31-31

2017

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A method to constrain genome-scale models with [sup.13]C labeling data

PLoS computational biology, 2015-09, Vol.11 (9)

2015

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Características físicas y químicas de la semilla de calabaza para mecanización y procesamiento

Nova scientia, 2018, Vol.10 (21), p.61-77

2018

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A peptide-based method for [sup.13]C metabolic flux analysis in microbial communities

PLoS computational biology, 2014-09, Vol.10 (9)

2014

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A High-Quality Genome-Scale Model for Rhodococcus opacus Metabolism

ACS synthetic biology, 2023-06, Vol.12 (6), p.1632-1644

2023

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Parámetros tecnológicos de interés agroindustrial de las semillas de calabaza de castilla (C. moschata) y calabaza hedionda (A. undulata)

Revista de investigaciones altoandinas, 2023-04, Vol.25 (2), p.73-82

2023

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A Method to Constrain Genome-Scale Models with 13 C Labeling Data: e1004363

PLoS computational biology, 2015-09, Vol.11 (9)

2015

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A Peptide-Based Method for 13 C Metabolic Flux Analysis in Microbial Communities: e1003827

PLoS computational biology, 2014-09, Vol.10 (9)

2014

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Special Issue on Artificial Intelligence for Synthetic Biology

ACS synthetic biology, 2024-02, Vol.13 (2), p.408-410

2024

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A peptide-based method for 13C Metabolic Flux Analysis in microbial communities

PLoS computational biology, 2014-09, Vol.10 (9), p.e1003827-e1003827

2014

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Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation

Accurate phylogenetic classification of variable-length DNA fragments

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

ClusterCAD: a computational platform for type I modular polyketide synthase design

Synthetic and systems biology for microbial production of commodity chemicals

On the Origin and Robustness of Power-Law Species-Area Relationships in Ecology

A Method to Constrain Genome-Scale Models with 13C Labeling Data

Automated “Cells-To-Peptides” Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

Common principles and best practices for engineering microbiomes

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases

Flux Analysis of Central Metabolic Pathways in Geobacter metallireducens during Reduction of Soluble Fe(III)-Nitrilotriacetic Acid

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

Microbial Synthesis of Pinene

Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein

Flux-Enabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism

A method to constrain genome-scale models with [sup.13]C labeling data

Características físicas y químicas de la semilla de calabaza para mecanización y procesamiento

A peptide-based method for [sup.13]C metabolic flux analysis in microbial communities

A High-Quality Genome-Scale Model for Rhodococcus opacus Metabolism

Parámetros tecnológicos de interés agroindustrial de las semillas de calabaza de castilla (C. moschata) y calabaza hedionda (A. undulata)

A Method to Constrain Genome-Scale Models with 13 C Labeling Data: e1004363

A Peptide-Based Method for 13 C Metabolic Flux Analysis in Microbial Communities: e1003827

Special Issue on Artificial Intelligence for Synthetic Biology

A peptide-based method for 13C Metabolic Flux Analysis in microbial communities

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