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AlignNemo: a local network alignment method to integrate homology and topology

PloS one, 2012-06, Vol.7 (6), p.e38107-e38107

2012

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Analysis of interactions between ribosomal proteins and RNA structural motifs

BMC bioinformatics, 2010-01, Vol.11 Suppl 1 (S1), p.S41-S41, Article S41

2010

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A global optimization algorithm for protein surface alignment

BMC bioinformatics, 2010-09, Vol.11 (1), p.488-488, Article 488

2010

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On the functional and structural characterization of hubs in protein–protein interaction networks

Biotechnology advances, 2013-03, Vol.31 (2), p.274-286

2013

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On the interconnection of stable protein complexes: inter-complex hubs and their conservation in Saccharomyces cerevisiae and Homo sapiens networks

International journal of bioinformatics research and applications, 2015, Vol.11 (6), p.483

Guerra, Concettina

2015

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A new distributed alignment-free approach to compare whole proteomes

Theoretical computer science, 2017-10, Vol.698, p.100-112

2017

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Semantic similarity analysis of protein data: assessment with biological features and issues

Briefings in bioinformatics, 2012-09, Vol.13 (5), p.569-585

2012

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Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology – Preface

BMC bioinformatics, 2007-05, Vol.8 (S5), p.S1-S1, Article S1

2007

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EDoP Distance Between Sets of Incomplete Permutations: Application to Bacteria Classification Based on Gene Order

Journal of computational biology, 2018-11, Vol.25 (11), p.1193-1202

2018

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Mathematical Methods for Protein Structure Analysis and Design: C.I.M.E. Summer School, Martina Franca, Italy, July 9-15, 2000. Advanced Lectures

2003

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Rank-Similarity Measures for Comparing Gene Prioritizations: A Case Study in Autism

Journal of computational biology, 2021-03, Vol.28 (3), p.283-295

2021

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Sequence similarity measures based on bounded hamming distance

Theoretical computer science, 2016-07, Vol.638, p.76-90

2016

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New Methods for Detecting Lineage-Specific Selection

Research in Computational Molecular Biology, 2006, p.190-205

2006

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Predicting protein-ligand and protein-peptide interfaces

European physical journal plus, 2014-06, Vol.129 (6), p.132, Article 132

2014

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Protein Structure Comparison: Algorithms and Applications

Mathematical Methods for Protein Structure Analysis and Design, 2003, p.1-33

2003

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Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology

BMC neuroscience, 2015-04, Vol.16 (1), p.28-28, Article 28

2015

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Cavity detection and matching for binding site recognition

Theoretical computer science, 2008-11, Vol.408 (2), p.151-162

2008

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CONTRAlign: Discriminative Training for Protein Sequence Alignment

Research in Computational Molecular Biology, 2006, p.160-174

2006

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Mathematical Methods for Protein Structure Analysis and Design: Advanced Lectures

1, 2003

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Reconstructing Parameterized Strings from Parameterized Suffix and LCP Arrays

String Processing and Information Retrieval, 2022, Vol.13617, p.55-69

2022

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Line-based object recognition using Hausdorff distance: from range images to molecular secondary structures

Image and vision computing, 2005-04, Vol.23 (4), p.405-415

2005

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Computational Methods for the Prediction of Protein-Protein Interactions

Combinatorial Image Analysis, 2011, p.13-16

2011

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MolLoc: a web tool for the local structural alignment of molecular surfaces

Nucleic acids research, 2009-07, Vol.37 (Web Server issue), p.W565-W570

2009

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Finding 3D motifs in ribosomal RNA structures

Nucleic acids research, 2009-03, Vol.37 (4), p.e29-e29

2009

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Research in computational molecular biology: 10th annual international conference, RECOMB 2006, Venice Italy, April 2006 : proceedings

2006, 2014

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AlignNemo: a local network alignment method to integrate homology and topology

Analysis of interactions between ribosomal proteins and RNA structural motifs

A global optimization algorithm for protein surface alignment

On the functional and structural characterization of hubs in protein–protein interaction networks

On the interconnection of stable protein complexes: inter-complex hubs and their conservation in Saccharomyces cerevisiae and Homo sapiens networks

A new distributed alignment-free approach to compare whole proteomes

Semantic similarity analysis of protein data: assessment with biological features and issues

Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology – Preface

EDoP Distance Between Sets of Incomplete Permutations: Application to Bacteria Classification Based on Gene Order

Mathematical Methods for Protein Structure Analysis and Design: C.I.M.E. Summer School, Martina Franca, Italy, July 9-15, 2000. Advanced Lectures

Rank-Similarity Measures for Comparing Gene Prioritizations: A Case Study in Autism

Sequence similarity measures based on bounded hamming distance

New Methods for Detecting Lineage-Specific Selection

Predicting protein-ligand and protein-peptide interfaces

Protein Structure Comparison: Algorithms and Applications

Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology

Cavity detection and matching for binding site recognition

CONTRAlign: Discriminative Training for Protein Sequence Alignment

Mathematical Methods for Protein Structure Analysis and Design: Advanced Lectures

Reconstructing Parameterized Strings from Parameterized Suffix and LCP Arrays

Line-based object recognition using Hausdorff distance: from range images to molecular secondary structures

Computational Methods for the Prediction of Protein-Protein Interactions

MolLoc: a web tool for the local structural alignment of molecular surfaces

Finding 3D motifs in ribosomal RNA structures

Research in computational molecular biology: 10th annual international conference, RECOMB 2006, Venice Italy, April 2006 : proceedings

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