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Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

Nature communications, 2019-03, Vol.10 (1), p.990-990, Article 990

2019

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A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

The EMBO journal, 2011-10, Vol.30 (19), p.4006-4019

2011

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The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

The EMBO journal, 2011-05, Vol.30 (9), p.1790-1803

2011

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Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation

eLife, 2020-05, Vol.9

2020

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

Proceedings of the National Academy of Sciences - PNAS, 2009-06, Vol.106 (24), p.9613-9618

2009

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Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

Proceedings of the National Academy of Sciences - PNAS, 2011-06, Vol.108 (24), p.10010-10015

2011

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Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli

Molecular cell, 2014-07, Vol.55 (2), p.199-213

2014

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diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data

Genome Biology, 2021-05, Vol.22 (1), p.165-165, Article 165

2021

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RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

BMC biology, 2017-11, Vol.15 (1), p.105-105, Article 105

2017

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The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins

Nature communications, 2022-05, Vol.13 (1), p.2883-18, Article 2883

2022

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Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation

PLoS genetics, 2017-05, Vol.13 (5), p.e1006804

2017

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Puf6 primes 60S pre-ribosome nuclear export at low temperature

Nature communications, 2021-08, Vol.12 (1), p.4696-4696, Article 4696

2021

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Temporal-iCLIP captures co-transcriptional RNA-protein interactions

Nature communications, 2023-02, Vol.14 (1), p.696-696, Article 696

2023

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The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

eLife, 2024-10, Vol.12

2024

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Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

Nature structural & molecular biology, 2012-08, Vol.19 (8), p.744-753

2012

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RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance

Nature communications, 2022-06, Vol.13 (1), p.1-15, Article 3558

2022

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Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1

Cell reports (Cambridge), 2015-12, Vol.13 (11), p.2504-2515

2015

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Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis

Molecular cell, 2009-11, Vol.36 (4), p.583-592

2009

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Vanillin inhibits translation and induces messenger ribonucleoprotein (mRNP) granule formation in saccharomyces cerevisiae: application and validation of high-content, image-based profiling

PloS one, 2013-04, Vol.8 (4), p.e61748-e61748

2013

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The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot

PLoS biology, 2015-02, Vol.13 (2), p.e1002083-e1002083

2015

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Impact of two neighbouring ribosomal protein clusters on biogenesis factor binding and assembly of yeast late small ribosomal subunit precursors

PloS one, 2019-01, Vol.14 (1), p.e0203415-e0203415

2019

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Interaction between the assembly of the ribosomal subunits: Disruption of 40S ribosomal assembly causes accumulation of extra-ribosomal 60S ribosomal protein uL18/L5

PloS one, 2020-01, Vol.15 (1), p.e0222479-e0222479

2020

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The mitochondrial RNA landscape of Saccharomyces cerevisiae

PloS one, 2013-10, Vol.8 (10), p.e78105-e78105

2013

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Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress

Nature communications, 2017-04, Vol.8 (1), p.12-18, Article 12

2017

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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling

Genome Biology, 2015-12, Vol.16 (1), p.282-282, Article 282

2015

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Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli

diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins

Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation

Puf6 primes 60S pre-ribosome nuclear export at low temperature

Temporal-iCLIP captures co-transcriptional RNA-protein interactions

The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1

Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis

Vanillin inhibits translation and induces messenger ribonucleoprotein (mRNP) granule formation in saccharomyces cerevisiae: application and validation of high-content, image-based profiling

The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot

Impact of two neighbouring ribosomal protein clusters on biogenesis factor binding and assembly of yeast late small ribosomal subunit precursors

Interaction between the assembly of the ribosomal subunits: Disruption of 40S ribosomal assembly causes accumulation of extra-ribosomal 60S ribosomal protein uL18/L5

The mitochondrial RNA landscape of Saccharomyces cerevisiae

Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress

Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling

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