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Pre2Pub-Tracking the Path From Preprint to Journal Article: Algorithm Development and Validation

Journal of medical Internet research, 2022-04, Vol.24 (4), p.e34072-e34072

2022

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We are not ready yet: limitations of state-of-the-art disease named entity recognizers

Journal of biomedical semantics, 2022-10, Vol.13 (1), p.1-26, Article 26

2022

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COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur

Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 2021-09, Vol.64 (9), p.1084-1092

2021

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Semantic Metadata Annotation Services in the Biomedical Domain—A Literature Review

Applied sciences, 2022-01, Vol.12 (2), p.796

2022

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Synthetic data generation for a longitudinal cohort study – evaluation, method extension and reproduction of published data analysis results

Scientific reports, 2024-06, Vol.14 (1), p.14412-15, Article 14412

2024

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ProMiner: rule-based protein and gene entity recognition

BMC bioinformatics, 2005-05, Vol.6 Suppl 1 (S1), p.S14-S14, Article S14

2005

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SEAweb: the small RNA Expression Atlas web application

Nucleic acids research, 2020-01, Vol.48 (D1), p.D204-D219

2020

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Detecting miRNA Mentions and Relations in Biomedical Literature [version 3; peer review: 2 approved, 1 approved with reservations]

F1000 research, 2015-10, Vol.3, p.205-205

2015

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Information Extraction from German Clinical Care Documents in Context of Alzheimer’s Disease

Applied sciences, 2021-11, Vol.11 (22), p.10717

2021

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Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19

Datenbank-Spektrum : Zeitschrift für Datenbanktechnologie : Organ der Fachgruppe Datenbanken der Gesellschaft für Informatik e.V, 2024, Vol.24 (2), p.117-128

2024

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The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track

Database : the journal of biological databases and curation, 2016-01, Vol.2016, p.baw136

2016

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Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

Database : the journal of biological databases and curation, 2016, Vol.2016, p.baw113

2016

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Mining biomarker information in biomedical literature

BMC medical informatics and decision making, 2012-12, Vol.12 (1), p.148-148, Article 148

2012

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An Annotation Workbench for Semantic Annotation of Data Collection Instruments

Studies in health technology and informatics, 2023, Vol.302, p.108

2023

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Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports

Journal of biomedical informatics, 2012-10, Vol.45 (5), p.885-892

2012

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Text mining for systems biology

Drug discovery today, 2014-02, Vol.19 (2), p.140-144

2014

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The Autoimmune Disease Database: a dynamically compiled literature-derived database

BMC bioinformatics, 2006-06, Vol.7 (1), p.325-325, Article 325

2006

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Data Publication for Personalised Health Data: A New Publication Standard Introduced by NFDI4Health

Proceedings of the Conference on Research Data Infrastructure, 2023-09, Vol.1

2023

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Knowledge environments representing molecular entities for the virtual physiological human

Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences, 2008-09, Vol.366 (1878), p.3091-3110

2008

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Detecting miRNA Mentions and Relations in Biomedical Literature [version 2; peer review: 2 approved, 1 approved with reservations]

F1000 research, 2014, Vol.3, p.205

2014

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Continuous development of the semantic search engine preVIEW : from COVID-19 to long COVID

Database : the journal of biological databases and curation, 2022-07, Vol.2022

2022

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Dataset of miRNA–disease relations extracted from textual data using transformer-based neural networks

Database : the journal of biological databases and curation, 2024-08, Vol.2024

2024

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NFDI4Health – Task Force COVID-19

Proceedings of the Conference on Research Data Infrastructure, 2023-09, Vol.1

2023

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Making COVID-19 research data more accessible-building a nationwide information infrastructure

Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, 2021-09, Vol.64 (9), p.1084-1092

2021

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Pre2Pub-Tracking the Path From Preprint to Journal Article: Algorithm Development and Validation

We are not ready yet: limitations of state-of-the-art disease named entity recognizers

COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur

Semantic Metadata Annotation Services in the Biomedical Domain—A Literature Review

Synthetic data generation for a longitudinal cohort study – evaluation, method extension and reproduction of published data analysis results

ProMiner: rule-based protein and gene entity recognition

SEAweb: the small RNA Expression Atlas web application

Detecting miRNA Mentions and Relations in Biomedical Literature [version 3; peer review: 2 approved, 1 approved with reservations]

Information Extraction from German Clinical Care Documents in Context of Alzheimer’s Disease

Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

Mining biomarker information in biomedical literature

An Annotation Workbench for Semantic Annotation of Data Collection Instruments

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports

Text mining for systems biology

The Autoimmune Disease Database: a dynamically compiled literature-derived database

Data Publication for Personalised Health Data: A New Publication Standard Introduced by NFDI4Health

Knowledge environments representing molecular entities for the virtual physiological human

Detecting miRNA Mentions and Relations in Biomedical Literature [version 2; peer review: 2 approved, 1 approved with reservations]

Continuous development of the semantic search engine preVIEW : from COVID-19 to long COVID

Dataset of miRNA–disease relations extracted from textual data using transformer-based neural networks

FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung: Herausforderungen und Lösungsansätze für den Aufbau einer FAIRen Forschungsdateninfrastruktur

NFDI4Health – Task Force COVID-19

Making COVID-19 research data more accessible-building a nationwide information infrastructure

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